RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 APOL1O14791 398 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 POP7O75817 140 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 MTHFD1P11586 935 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 SPAM1P38567 509 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 IL10RAQ13651 578 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 ITGA9Q13797 1035 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 INPP5JQ15735 1006 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 TEX44Q53QW1 395 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 SLC9A4Q6AI14 798 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 JMJD6Q6NYC1 403 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 MED25Q71SY5 747 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 BZW1Q7L1Q6 419 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 TMEM102Q8N9M5 508 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 DDHD1Q8NEL9 900 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 GPR150Q8NGU9 434 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 RAPGEF5Q92565 580 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 NLNQ9BYT8 704 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 AKIRIN1Q9H9L7 192 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 GLOD4Q9HC38 313 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 IL26Q9NPH9 171 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 ACSL5Q9ULC5 683 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 SNX7Q9UNH6 387 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 BTRCQ9Y297 605 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 MATN2O00339 956 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 MAP3K7O43318 606 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 SEMA7AO75326 666 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 PMPCBO75439 489 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 EPOP01588 193 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 PTGIRP43119 386 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 TPM4P67936 248 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 CHAF1BQ13112 559 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 XRCC4Q13426 336 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 PPP2R5EQ16537 467 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 LONRF2Q1L5Z9 754 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 ODF2Q5BJF6 829 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 METRNLQ641Q3 311 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 HIST2H2BCQ6DN03 193 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 SPATA22Q8NHS9 363 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 ADAMTS17Q8TE56 1095 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 PNPLA2Q96AD5 504 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 ZNF501Q96CX3 271 aaPredicted RBP14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 OLFM3Q96PB7 478 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 RUFY1Q96T51 708 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 ANP32EQ9BTT0 268 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 CEP41Q9BYV8 373 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 CHST8Q9H2A9 424 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 BPIFA1Q9NP55 256 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 IMP3Q9NV31 184 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 SOHLH2Q9NX45 425 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 TMEM63CQ9P1W3 806 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 FAM153AQ9UHL3 310 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 CAPN11Q9UMQ6 739 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 PSMD13Q9UNM6 376 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 LUC7L2Q9Y383 392 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 PKP3Q9Y446 797 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 SPO11Q9Y5K1 396 aa14.42□□□□□ -0.1
CCDC88B-201ENST00000301897 MEN1O00255 615 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 AURKAO14965 403 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 KLHL41O60662 606 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 TMEM63AO94886 807 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 MT-CYBP00156 380 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 NDUFS1P28331 727 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 VAV2P52735 878 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 ADCY2Q08462 1091 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 PRKAA1Q13131 559 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 GPS2Q13227 327 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 IQCB1Q15051 598 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 GPR19Q15760 415 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 TMEM220Q6QAJ8 160 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 MAMDC2Q7Z304 686 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 CPNE8Q86YQ8 564 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 DSELQ8IZU8 1212 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 ENDOVQ8N8Q3 282 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 RASGEF1AQ8N9B8 481 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 GLIS1Q8NBF1 620 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 TEKT5Q96M29 485 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 IP6K3Q96PC2 410 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 DPH2Q9BQC3 489 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 KIR3DX1Q9H7L2 352 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 CASS4Q9NQ75 786 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 SMOXQ9NWM0 555 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 GPR83Q9NYM4 423 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 IL17CQ9P0M4 197 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 C5AR2Q9P296 337 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 TCFL5Q9UL49 500 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 HEBP2Q9Y5Z4 205 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 COLEC10Q9Y6Z7 277 aa14.41□□□□□ -0.1
CCDC88B-201ENST00000301897 GLYATL1P3A0A0U1RQE8 302 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 LOC285095A0A1B0GVY8 99 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 OR6C74A6NCV1 312 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 MGAT4DA6NG13 374 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 SLC35G4P0C7Q5 338 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 MSL3P1P0C860 447 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 MSH3P20585 1137 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 PBX1P40424 430 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 NR2C2P49116 596 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 CTSCP53634 463 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 NFE2L1Q14494 772 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 PLEKHS1Q5SXH7 462 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 SLC6A19Q695T7 634 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms