RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TSPAN16Q9UKR8 245 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 SH3BP1Q9Y3L3 701 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 A0A075B6Q4 140 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 MICAL2O94851 1124 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 GIMD1P0DJR0 217 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PCNAP12004 261 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 CD9P21926 228 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 HTR1EP28566 365 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 NNMTP40261 264 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TTLL4Q14679 1199 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TARBP2Q15633 366 aaKnown RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 GRIK5Q16478 980 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 SIAH1Q8IUQ4 282 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 ELMOD2Q8IZ81 293 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 DCP1BQ8IZD4 617 aaKnown RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 ARMC10Q8N2F6 343 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 EFHBQ8N7U6 833 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PIK3R3Q92569 461 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 LPGAT1Q92604 370 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 FCRL5Q96RD9 977 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 HTATIP2Q9BUP3 242 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 MTMR12Q9C0I1 747 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 DNAJB9Q9UBS3 223 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 ZMAT5Q9UDW3 170 aaKnown RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 CDH9Q9ULB4 789 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 WDR27A2RRH5 827 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 RAB19A4D1S5 217 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 CASKO14936 926 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 AURKAO14965 403 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 MSCO60682 206 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 ALDOAP04075 364 aaKnown RBP6.34□□□□□ -1.4
VPS35-201ENST00000299138 TAF6P49848 677 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 INHBEP58166 350 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 CAPSQ13938 189 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 CEACAM7Q14002 265 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 DPY19L1Q2PZI1 675 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 CLEC10AQ8IUN9 316 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 PQLC3Q8N755 202 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 OR8K3Q8NH51 312 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 HERPUD2Q9BSE4 406 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 FAM49AQ9H0Q0 323 aaPredicted RBP6.34□□□□□ -1.4
VPS35-201ENST00000299138 GPRC5CQ9NQ84 441 aa6.34□□□□□ -1.4
VPS35-201ENST00000299138 IGKV6-21A0A0C4DH24 114 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 KANTRA0A1W2PQU2 76 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 HTR3EA5X5Y0 456 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ACOT8O14734 319 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CPNE6O95741 557 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 NR4A1P22736 598 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MAGEA11P43364 429 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 NAGLUP54802 743 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GDF10P55107 478 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SKP1P63208 163 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GSTM4Q03013 218 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 HKDC1Q2TB90 917 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PPM1LQ5SGD2 360 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GTF2IRD2BQ6EKJ0 949 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GTF2IRD2Q86UP8 949 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 AMIGO3Q86WK7 504 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PTRH1Q86Y79 214 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 RHEBL1Q8TAI7 183 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 C12orf43Q96C57 262 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 PGAP3Q96FM1 320 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 CCDC120Q96HB5 630 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CEP295NLQ96MC4 621 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 C19orf43Q9BQ61 176 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 TBCDQ9BTW9 1192 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MAGIXQ9H6Y5 334 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RASSF1Q9NS23 344 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PPEF2O14830 753 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 TGM6O95932 706 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PNPP00491 289 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RAP2AP10114 183 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ALDH9A1P49189 494 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RPL34P49207 117 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 DAG1Q14118 895 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF181Q2M3W8 571 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RNF149Q8NC42 400 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PAPD5Q8NDF8 572 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 OR2L3Q8NG85 312 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 TEX47Q8TBZ9 253 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PWWP2AQ96N64 755 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SORT1Q99523 831 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PNPOQ9NVS9 261 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CLN6Q9NWW5 311 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CFAP97Q9P2B7 532 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SNX9Q9Y5X1 595 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CSADQ9Y600 493 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ABCA3Q99758 1704 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MYH13Q9UKX3 1938 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GNG14A0A1W2PPG7 69 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FUOMA2VDF0 154 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 AP2A2O94973 939 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ANXA11P50995 505 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF252P-AS1Q0IIN9 211 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CDC20Q12834 499 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GOLGA7BQ2TAP0 167 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 C6orf52Q5T4I8 152 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 LCN1P1Q5VSP4 162 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FOXB2Q5VYV0 432 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 NEPROQ6NW34 567 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms