RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 CRTC2Q53ET0 693 aaPredicted RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 SLC24A5Q71RS6 500 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 ECHDC2Q86YB7 292 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 SNRNP25Q9BV90 132 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 HIPK3Q9H422 1215 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 DNAAF2Q9NVR5 837 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 COL1A2P08123 1366 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 GRIN2DO15399 1336 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 hCG_1818297A0A087WSY0 165 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 STBD1O95210 358 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 POLR2JP52435 117 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 BST1Q10588 318 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 PDSS1Q5T2R2 415 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 SATL1Q86VE3 508 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 OR4K2Q8NGD2 314 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TRAPPC12Q8WVT3 735 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 IRGQQ8WZA9 623 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 GLOD4Q9HC38 313 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 ILVBLA1L0T0 632 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 SCAMP3O14828 347 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 NDST2P52849 883 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TSPAN5P62079 268 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 CDKL1Q00532 357 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 LCP2Q13094 533 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 PLA2G4EQ3MJ16 856 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 SPPL2BQ8TCT7 592 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 C2orf15Q8WU43 125 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 EQTNQ9NQ60 294 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 IFT52Q9Y366 437 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TECPR2O15040 1411 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 CRHR1P34998 444 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 GRM5P41594 1212 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 CCL23P55773 120 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 MRPS5P82675 430 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 ZZZ3Q8IYH5 903 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 HDDC3Q8N4P3 179 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TAS2R14Q9NYV8 317 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 PCDHGB2Q9Y5G2 931 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 AP2A2O94973 939 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 C1QTNF8P60827 252 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TUSC3Q13454 348 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 INTS6LQ5JSJ4 861 aaKnown RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 METTL21CQ5VZV1 264 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 KAT2AQ92830 837 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TLL2Q9Y6L7 1015 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 PDPK1O15530 556 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 TLR5O60602 858 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 PIM1P11309 404 aaPredicted RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 ANKRD23Q86SG2 305 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 NAT16Q8N8M0 369 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 C11orf65Q8NCR3 313 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 ZBED6CLQ96FA7 236 aaPredicted RBP9.23□□□□□ -0.93
CUX1-201ENST00000292535 SRMSQ9H3Y6 488 aa9.23□□□□□ -0.93
CUX1-201ENST00000292535 ZNF3P17036 446 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 CCR10P46092 362 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 AGAP11Q8TF27 550 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 LENG1Q96BZ8 264 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 RAI2Q9Y5P3 530 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 FER1L4A9Z1Z3 1794 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 PRAMEF12O95522 483 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 RLN2P04090 185 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 CASP9P55211 416 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 LSM3P62310 102 aaKnown RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 SP2Q02086 613 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 ZNF570Q96NI8 536 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 SMIM35A0A1B0GVV1 85 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 TCRBV9S1A1TA0A576 114 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 HYKKA2RU49 373 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 AGXTP21549 392 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 MSANTD2Q6P1R3 559 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 SPAG16Q8N0X2 631 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 ARL10Q8N8L6 244 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 CLHC1Q8NHS4 586 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 AZIN2Q96A70 460 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 SCGB2A1O75556 95 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 RB1P06400 928 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 PVALBP20472 110 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 MLLT3P42568 568 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 AKR1D1P51857 326 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 SLC25A3Q00325 362 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 LRRC52Q8N7C0 313 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 MAGEA2P43356 314 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 TLR1Q15399 786 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 MCFD2Q8NI22 146 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 ENY2Q9NPA8 101 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 NRXN1Q9ULB1 1477 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 SRRM3A6NNA2 597 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 SLC33A1O00400 549 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 OR1I1O60431 355 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 GBX2P52951 348 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 CRADDP78560 199 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 SLC25A52Q3SY17 297 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 P4HA3Q7Z4N8 544 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 CPSF7Q8N684 471 aaKnown RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 TCEAL3Q969E4 200 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 LHX5Q9H2C1 402 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 ZNF490Q9ULM2 529 aaPredicted RBP9.22□□□□□ -0.93
CUX1-201ENST00000292535 SPATA31C2B4DYI2 1134 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 PGAM2P15259 253 aa9.22□□□□□ -0.93
CUX1-201ENST00000292535 ITPKAP23677 461 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms