RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CEP97Q8IW35 865 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 OR13J1Q8NGT2 312 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 TWIST2Q8WVJ9 160 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 ACAT2Q9BWD1 397 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 SLC7A5P2Q9GIP4 190 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 IL26Q9NPH9 171 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 CROTQ9UKG9 612 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 SLC12A4Q9UP95 1085 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 TRIM24O15164 1050 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 HOXC11O43248 304 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 SH3BGRLO75368 114 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 SIX3O95343 332 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 LAMP2P13473 410 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 C5AR1P21730 350 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 TBL3Q12788 808 aaKnown RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 TMEM115Q12893 351 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 PEX6Q13608 980 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 PGS1Q32NB8 556 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 ATP13A5Q4VNC0 1218 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 CLEC6AQ6EIG7 209 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 C17orf64Q86WR6 236 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 DTX3LQ8TDB6 740 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 MYLIPQ8WY64 445 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 LPGAT1Q92604 370 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 OLFM1Q99784 485 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 CCT7Q99832 543 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 FBRSQ9HAH7 460 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 COQ6Q9Y2Z9 468 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 K7EPI3 171 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 UROSP10746 265 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 UBAP2LQ14157 1087 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 EML3Q32P44 896 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 VWA5B1Q5TIE3 1220 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 NRSN1Q8IZ57 195 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 DCBLD1Q8N8Z6 715 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 TXNDC5Q8NBS9 432 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SH3GL1Q99961 368 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CCDC154A6NI56 674 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 C5orf67F2Z3F1 127 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CLDN9O95484 217 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 COX4I1P13073 169 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ADRB3P13945 408 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 FDXRP22570 491 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ATXN3P54252 364 aaPredicted RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 RPL38P63173 70 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SYT12Q8IV01 421 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CNTN4Q8IWV2 1026 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 OR2A12Q8NGT7 310 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CCDC3Q9BQI4 270 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 TRIT1Q9H3H1 467 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PDFQ9HBH1 243 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 MIEF1Q9NQG6 463 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SPACA6W5XKT8 324 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CCDC189A1A4V9 331 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PRR5-ARHGAP8B1AHC4 643 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ISM1B1AKI9 464 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ITM2AO43736 263 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 OR4F21O95013 312 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 RASGRP1O95267 797 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PAK4O96013 591 aaPredicted RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SNRPB2P08579 225 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 DRD1P21728 446 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ITGB7P26010 798 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 GCAP28676 217 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 DGKEP52429 567 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CDKN2DP55273 166 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ARHGAP8P85298 464 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PON2Q15165 354 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF789Q5FWF6 425 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 TECRLQ5HYJ1 363 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CYB5D1Q6P9G0 228 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PIH1D2Q8WWB5 315 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 STARD8Q92502 1023 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 NUSAP1Q9BXS6 441 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SH3BP4Q9P0V3 963 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PSMD13Q9UNM6 376 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 AURKCQ9UQB9 309 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 LIN7AO14910 233 aaPredicted RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 MID1O15344 667 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 ZMPSTE24O75844 475 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 PRSS56P0CW18 603 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 C6P13671 934 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 IDO1P14902 403 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 S100A3P33764 101 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SOAT1P35610 550 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 EPHA5P54756 1037 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 AAK1Q2M2I8 961 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 FITM2Q8N6M3 262 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 DNAJC5GQ8N7S2 189 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 RP9Q8TA86 221 aaKnown RBP11.41□□□□□ -0.58
VPS4A-201ENST00000254950 QRFPRQ96P65 431 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 SMIM14Q96QK8 99 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 STOML2Q9UJZ1 356 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CLEC4EQ9ULY5 219 aa11.41□□□□□ -0.58
VPS4A-201ENST00000254950 CAPN1P07384 714 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 PIK3R1P27986 724 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 RPS21P63220 83 aaKnown RBP11.4□□□□□ -0.58
VPS4A-201ENST00000254950 KLF10Q13118 480 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 PRKG2Q13237 762 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 PLEKHS1Q5SXH7 462 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms