RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 LIMD1Q9UGP4 676 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 SLC8A2Q9UPR5 921 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 SLC30A1Q9Y6M5 507 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 SYCE1LA8MT33 242 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 ZBTB11O95625 1053 aaPredicted RBP21.02■□□□□ 0.96
TRIM28-201ENST00000253024 CAPNS1P04632 268 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 SLC11A2P49281 568 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 FAM174BQ3ZCQ3 159 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 LCN8Q6JVE9 175 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 CYP20A1Q6UW02 462 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 GOLGA7Q7Z5G4 137 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 MIPOL1Q8TD10 442 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 MYLIPQ8WY64 445 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 SMPD3Q9NY59 655 aaPredicted RBP21.02■□□□□ 0.96
TRIM28-201ENST00000253024 DNMT3LQ9UJW3 386 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 CNOT11Q9UKZ1 510 aaKnown RBP21.02■□□□□ 0.96
TRIM28-201ENST00000253024 NEK2P51955 445 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 RHOAP61586 193 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 TAF1AQ15573 450 aaPredicted RBP21.01■□□□□ 0.95
TRIM28-201ENST00000253024 CPSF6Q16630 551 aaKnown RBP eCLIP21.01■□□□□ 0.95
TRIM28-201ENST00000253024 TRIM71Q2Q1W2 868 aaKnown RBP21.01■□□□□ 0.95
TRIM28-201ENST00000253024 DET1Q7L5Y6 550 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 PYCR2Q96C36 320 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 LEF1Q9UJU2 399 aaPredicted RBP21.01■□□□□ 0.95
TRIM28-201ENST00000253024 VWA8A3KMH1 1905 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 TMEM88BA6NKF7 163 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 SMAD6O43541 496 aaKnown RBP21.01■□□□□ 0.95
TRIM28-201ENST00000253024 HSD17B1P14061 328 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 SHMT2P34897 504 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 PRKG2Q13237 762 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 RAB39AQ14964 217 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 CYBRD1Q53TN4 286 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 RGMBQ6NW40 437 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 GCNT7Q6ZNI0 430 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 TMBIM1Q969X1 311 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 GLT1D1Q96MS3 346 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 UHRF1Q96T88 793 aaPredicted RBP21.01■□□□□ 0.95
TRIM28-201ENST00000253024 DGCR6LQ9BY27 220 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 LRFN2Q9ULH4 789 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 PCDHB7Q9Y5E2 793 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 CASP8AP2Q9UKL3 1982 aa21.01■□□□□ 0.95
TRIM28-201ENST00000253024 KLHL33A6NCF5 533 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 AQP12BA6NM10 295 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 PTGES3LE9PB15 166 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 J3QRK9 145 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 GNGT2O14610 69 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 GSTA4O15217 222 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 TBL1XO60907 577 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ATP6AP1Q15904 470 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 AQP12AQ8IXF9 295 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ITFG1Q8TB96 612 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 FBXL8Q96CD0 374 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ACTL8Q9H568 366 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 INVSQ9Y283 1065 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 PKP3Q9Y446 797 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ZNF182P17025 639 aaPredicted RBP21■□□□□ 0.95
TRIM28-201ENST00000253024 SLC26A3P40879 764 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ALDH3B2P48448 385 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 CDK9P50750 372 aaKnown RBP21■□□□□ 0.95
TRIM28-201ENST00000253024 SUOXP51687 545 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 FCGRTP55899 365 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ERVK-8P63133 956 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ARHGEF7Q14155 803 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 SLC36A3Q495N2 470 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 KCTD21Q4G0X4 260 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 KLHL35Q6PF15 583 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 HACD2Q6Y1H2 254 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 TPGS1Q6ZTW0 290 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 SAPCD2Q86UD0 394 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 GPR150Q8NGU9 434 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 CCDC90BQ9GZT6 254 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 PAIP1Q9H074 479 aaKnown RBP21■□□□□ 0.95
TRIM28-201ENST00000253024 SLC6A13Q9NSD5 602 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 A0A087WXM4 84 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 TCRBV5S2A0A599 114 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 NBNO60934 754 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 PRAMEF1O95521 474 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ALBP02768 609 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 MAPKAPK2P49137 400 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ATP4BP51164 291 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 DCTN2Q13561 401 aaKnown RBP21■□□□□ 0.95
TRIM28-201ENST00000253024 TCTN1Q2MV58 587 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 SPANXN4Q5MJ08 99 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 KIAA1841Q6NSI8 718 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 RFLNAQ6ZTI6 216 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 DEFB128Q7Z7B8 93 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ADGRG2Q8IZP9 1017 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ZUFSPQ96AP4 578 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 THAP11Q96EK4 314 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ASB8Q9H765 288 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 ELOVL2Q9NXB9 296 aa21■□□□□ 0.95
TRIM28-201ENST00000253024 SLC25A14O95258 325 aaPredicted RBP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 CLDN7O95471 211 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 MTHFRP42898 656 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 CCL23P55773 120 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 BNIP2Q12982 314 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 GTF2H2Q13888 395 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 AARS2Q5JTZ9 985 aaKnown RBP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 GTF2H2CQ6P1K8 395 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 C10orf111Q8N326 155 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms