RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CMTM5Q96DZ9 223 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 NSUN5Q96P11 429 aaKnown RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 KCNA7Q96RP8 456 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 TRIM8Q9BZR9 551 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 NSMCE4AQ9NXX6 385 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 STOML1Q9UBI4 398 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 CIDEBQ9UHD4 219 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 MID2Q9UJV3 735 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 NEU3Q9UQ49 428 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 NIPSNAP2O75323 286 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CLDN11O75508 207 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PSMG1O95456 288 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 UBTFL6P0CB48 400 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 COX4I1P13073 169 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ENGP17813 658 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PIK3CGP48736 1102 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 IL10RBQ08334 325 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 INSCQ1MX18 579 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TSNAXIP1Q2TAA8 658 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 HNRNPA1L2Q32P51 320 aaKnown RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PAQR3Q6TCH7 311 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 KDELC1Q6UW63 502 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 Q6ZVU0 165 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SPATA24Q86W54 205 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 OR13J1Q8NGT2 312 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 RTKNQ9BST9 563 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 DCLRE1BQ9H816 532 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 DLL3Q9NYJ7 618 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 RNF112Q9ULX5 631 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SLC30A1Q9Y6M5 507 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 V9GYQ6 96 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 MAP1BP46821 2468 aaKnown RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ASXL3Q9C0F0 2248 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PLK4O00444 970 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 KPNA3O00505 521 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SLC30A4O14863 429 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 INSIG1O15503 277 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SEMA4FO95754 770 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 LINC00032P0C843 101 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CRABP2P29373 138 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 MC4RP32245 332 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PRKAA1Q13131 559 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 NAB1Q13506 487 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 MANEALQ5VSG8 457 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PSAPL1Q6NUJ1 521 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CYP2R1Q6VVX0 501 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ZYG11AQ6WRX3 759 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CILP2Q8IUL8 1156 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ARRDC2Q8TBH0 407 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 GRIN3AQ8TCU5 1115 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TUBGCP3Q96CW5 907 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CDKN2AIPNLQ96HQ2 116 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 C1orf74Q96LT6 269 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 GPR21Q99679 349 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SLC39A3Q9BRY0 314 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 C6orf106Q9H6K1 298 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ITM2CQ9NQX7 267 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 AASDHPPTQ9NRN7 309 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 WSB2Q9NYS7 404 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CD274Q9NZQ7 290 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 HACD3Q9P035 362 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SLC6A14Q9UN76 642 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 RAP2CQ9Y3L5 183 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3DA0A087WVF3 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3IA0A087WXS9 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3EA0A087X179 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3KA0A087X1G2 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3FA6NER0 549 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3LB9A6J9 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 NVLO15381 856 aaKnown RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SMIM24O75264 130 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3HP0C7X1 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ZCCHC18P0CG32 403 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 OXTRP30559 389 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 MAT2AP31153 395 aaKnown RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SULT2A1Q06520 285 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CYLC2Q14093 348 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SEMA3AQ14563 771 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TSNQ15631 228 aaKnown RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 RBBP7Q16576 425 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 DUOXA1Q1HG43 343 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PARP15Q460N3 678 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 PRAMEF14Q5SWL7 426 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 LPCAT4Q643R3 524 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3GQ6DHY5 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3CQ6IPX1 549 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 DET1Q7L5Y6 550 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 TBC1D3Q8IZP1 549 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 DNAJC9Q8WXX5 260 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CDK15Q96Q40 435 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 EGFL8Q99944 293 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 MYOCQ99972 504 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 FEM1AQ9BSK4 669 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 C2orf49Q9BVC5 232 aaPredicted RBP8.55□□□□□ -1.04
VPS4B-201ENST00000238497 CCDC106Q9BWC9 280 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 LATS2Q9NRM7 1088 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 SUSD2Q9UGT4 822 aa8.55□□□□□ -1.04
VPS4B-201ENST00000238497 ACACAQ13085 2346 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 EDDM13A0A1B0GTR0 161 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms