RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Gm20911A0A087WSS0 222 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Polr2jO08740 117 aaKnown RBP15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Tnfsf4P43488 198 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Lrpap1P55302 360 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 PrkcgP63318 697 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Cyb5r4Q3TDX8 528 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Fubp3Q3TIX6 575 aaKnown RBP15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Cers6Q8C172 384 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Sh3glb2Q8R3V5 400 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 AadacQ99PG0 398 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Fam71dD3YV92 440 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 H2-M9O19442 342 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Polr3bP59470 1133 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 1700001K19RikQ80ZT1 219 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Fem1cQ8CEF1 617 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Atg10Q8R1P4 215 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Socs4Q91ZA6 436 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Ehd3Q9QXY6 535 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Dpy19l2P0CW70 773 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 OstnP61364 130 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Rassf5Q5EBH1 413 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Dpy19l3Q71B07 716 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Trim50Q810I2 483 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Tspan9Q8BJU2 239 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Vmp1Q99KU0 406 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Serpini2Q9JK88 405 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 HephQ9Z0Z4 1157 aa15.37■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gm4756A0A140LIS8 335 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Hmgb3O54879 200 aaKnown RBP15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Enpp1P06802 906 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Trim45Q6PFY8 580 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Wfikkn2Q7TQN3 571 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Rxfp4Q7TQP4 414 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Atl1Q8BH66 558 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Arel1Q8CHG5 823 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Trim61Q8JZK6 461 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Olfr1019Q8VGS3 310 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Slc28a3Q9ERH8 703 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Ninj2Q9JL89 143 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Carm1Q9WVG6 608 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Atrnl1Q6A051 1378 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gm21497A0A087WRK3 222 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Nr5a2P45448 560 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Tmem151bQ68FE7 561 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Dusp16Q6PCP3 660 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Olfr855Q7TRF8 312 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Trib2Q8K4K3 343 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Vsig1Q9D2J4 407 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Xrn2Q9DBR1 951 aaKnown RBP15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Neurod4O09105 330 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Xkr9Q5GH62 373 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Dennd5aQ6PAL8 1287 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 MroQ7TNB4 248 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Adam29Q811Q4 763 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Rbms3Q8BWL5 431 aaKnown RBP15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Nudt13Q8JZU0 352 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Olfr273Q8VG87 317 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Olfr690Q8VH18 315 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 4930402K13RikB1AW18 415 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Usp51B1AY15 661 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Lipo4D3Z608 396 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Fbxw9F8VPX2 458 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Syngr1O55100 234 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Il12aP43431 215 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Pim3P58750 326 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Myl12bQ3THE2 172 aaKnown RBP15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gpsm3Q3U1Z5 159 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Lsmem1Q3UQS2 128 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Fam129aQ3UW53 926 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Olfr667Q7TRP4 326 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Trmt10aQ8C1Z8 328 aaKnown RBP15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Mettl21eQ8CDZ2 244 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Kctd5Q8VC57 234 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Rsph14Q9D3W1 341 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Hmgn3Q9DCB1 99 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Ecm29Q6PDI5 1840 aa15.36■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Sirpb1aA0A0A6YYP6 397 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 MttpO08601 894 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Kpna4O35343 521 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Alox5P48999 674 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Ap1s1P61967 158 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Sort1Q6PHU5 825 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 ToporsQ80Z37 1033 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Vrk2Q8BN21 503 aaKnown RBP15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Hddc3Q9D114 179 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Tor1bQ9ER41 336 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Asap1Q9QWY8 1147 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 A0A1L1ST33 502 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gm5072A2AHM1 344 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Vmn2r125D3Z3M1 369 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Fam124aD3Z5V4 536 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gm2956E9PVJ0 216 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gm8108K7N734 216 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Gm3488M0QW81 238 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Wnt6P22727 364 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Adamts1P97857 968 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Vps72Q62481 368 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Pik3r3Q64143 461 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Crtc1Q68ED7 630 aa15.35■□□□□ 0.05
Ccdc88b-201ENSMUST00000113440 Znf784Q8BI69 297 aa15.35■□□□□ 0.05
Retrieved 100 of 22,080 RNA–protein pairs in 15.2 ms