RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SETD4Q9NVD3 440 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 AFF4Q9UHB7 1163 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 DAGLAQ9Y4D2 1042 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PCDHGB7Q9Y5F8 929 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 NFASCO94856 1347 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LRRN3E7EW58 273 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CCNDBP1O95273 360 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF14P17017 642 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 UGT2B10P36537 528 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FEN1P39748 380 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LEPRP48357 1165 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GTF2BQ00403 316 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZIK1Q3SY52 487 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ATF7IP2Q5U623 682 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OVOS1Q6IE37 1185 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TOMM5Q8N4H5 51 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MINDY1Q8N5J2 469 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 DEDD2Q8WXF8 326 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 AIF1LQ9BQI0 150 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC29A3Q9BZD2 475 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LRRN3Q9H3W5 708 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RPF2Q9H7B2 306 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PNPOQ9NVS9 261 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PAK1IP1Q9NWT1 392 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CRLS1Q9UJA2 301 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OGDHLQ9ULD0 1010 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MYOM1P52179 1685 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ANKRD26Q9UPS8 1709 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 J3QRK9 145 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CXCR6O00574 342 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ADAM10O14672 748 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C9P02748 559 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FGRP09769 529 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SAGP10523 405 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC6A2P23975 617 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MAPK3P27361 379 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C6orf141Q5SZD1 244 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TIGD3Q6B0B8 471 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RAB11FIP2Q7L804 512 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 BTN2A2Q8WVV5 523 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FBXL8Q96CD0 374 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SCRN2Q96FV2 425 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC9A7Q96T83 725 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 AGAP2Q99490 1192 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC6A16Q9GZN6 736 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C8orf33Q9H7E9 229 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ANKRD34BA5PLL1 514 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CLDN24A6NM45 220 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 E7ESA3 106 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 UGT2B17O75795 530 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 AP2A2O94973 939 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FGFR1P11362 822 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 NAT1P18440 290 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MMP8P22894 467 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PTPN9P43378 593 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CDH13P55290 713 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ERVK-8P63133 956 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SMTNL2Q2TAL5 461 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM214Q6NUQ4 689 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FAM199XQ6PEV8 388 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 IL27RAQ6UWB1 636 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SERPINA13PQ6UXR4 307 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ATCAYQ86WG3 371 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CARM1Q86X55 608 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OR6Q1Q8NGQ2 317 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LENG9Q96B70 501 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PSKH2Q96QS6 385 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 HEBP1Q9NRV9 189 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TAS2R3Q9NYW6 316 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 NAALAD2Q9Y3Q0 740 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 A0A088AWK7 358 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 POLR1CO15160 346 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 B3GALNT1O75752 331 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 NDUFB10O96000 172 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CTPS1P17812 591 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 BTN3A2P78410 334 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TTLL4Q14679 1199 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C3orf33Q6P1S2 294 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SZRD1Q7Z422 152 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GRAMD2AQ8IUY3 354 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TNFRSF25Q93038 417 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C1GALT1C1Q96EU7 318 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CPB2Q96IY4 423 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 UFSP2Q9NUQ7 469 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GFOD1Q9NXC2 390 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RGS13O14921 159 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RDH16O75452 317 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GATBO75879 557 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 IL3P08700 152 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LSM3P62310 102 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SNAPC2Q13487 334 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SIAH1Q8IUQ4 282 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RXFP2Q8WXD0 754 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZDHHC12Q96GR4 267 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM176AQ96HP8 235 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PBDC1Q9BVG4 233 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SMURF1Q9HCE7 757 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ACTR10Q9NZ32 417 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 HCN2Q9UL51 889 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FAM159BA6NKW6 160 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms