RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ABCA8O94911 1581 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MDFIC2A0A1B0GVS7 189 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OR2AT4A6NND4 320 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TSPAN1O60635 241 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF432O94892 652 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC15A1P46059 708 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NR1H2P55055 460 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NFKB2Q00653 900 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TEKQ02763 1124 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PTSQ03393 145 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ABHD13Q7L211 337 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BEND5Q7L4P6 421 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC46A3Q7Z3Q1 461 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TRPM4Q8TD43 1214 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 HTRA1Q92743 480 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GJA10Q969M2 543 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 METTL22Q9BUU2 404 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 IL21RQ9HBE5 538 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM27Q9HBJ8 222 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC4CQ9HCJ2 640 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DZANK1Q9NVP4 752 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CD274Q9NZQ7 290 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NDUFAF4Q9P032 175 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FBXL17Q9UF56 701 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TCFL5Q9UL49 500 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC9A8Q9Y2E8 581 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF175Q9Y473 711 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C15orf38-AP3S2A0A0A6YYH1 394 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C1orf196B1AJZ1 125 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 HAS3O00219 553 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GLRA3O75311 464 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OTCP00480 354 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PRKCBP05771 671 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 THRAP10827 490 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 THRBP10828 461 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PCNAP12004 261 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ACO1P21399 889 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SPRP35270 261 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EIF5AP63241 154 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EN1Q05925 392 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PCID2Q5JVF3 399 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SNX20Q7Z614 316 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC71Q8IV32 467 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PHC2Q8IXK0 858 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FUKQ8N0W3 1084 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SPERTQ8NA61 448 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 POC1BQ8TC44 478 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FEM1CQ96JP0 617 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC74BQ96LY2 380 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZSCAN5AQ9BUG6 496 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TRMT61BQ9BVS5 477 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DGCR6LQ9BY27 220 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RNF38Q9H0F5 515 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LMAN2LQ9H0V9 348 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EHD4Q9H223 541 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BRF2Q9HAW0 419 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PDGFCQ9NRA1 345 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DEC1Q9P2X7 70 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MTMR6Q9Y217 621 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DNAJC16Q9Y2G8 782 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 KANTRA0A1W2PQU2 76 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ESYT3A0FGR9 886 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 AGAP5A6NIR3 686 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RGS14O43566 566 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FBXO21O94952 628 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MAGEA4P43358 317 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SMIM11AP58511 58 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DHODHQ02127 395 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GAD2Q05329 585 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EEPD1Q7L9B9 569 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PID1Q7Z2X4 250 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLCO6A1Q86UG4 719 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF410Q86VK4 478 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TERB2Q8NHR7 220 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FCRL3Q96P31 734 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC1Q9BTT6 524 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TTYH3Q9C0H2 523 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C8orf33Q9H7E9 229 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 KCNIP1Q9NZI2 227 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 VANGL2Q9ULK5 521 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DRG1Q9Y295 367 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CBY1Q9Y3M2 126 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MAP4K5Q9Y4K4 846 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BACE2Q9Y5Z0 518 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UNC13BO14795 1591 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 A0A0A6YYC8 382 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 I3L1I5 382 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 M0QX08 132 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 KHNYNO15037 678 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RIPK2O43353 540 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SNX3O60493 162 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 IFNA10P01566 189 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 IFNGP01579 166 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RLN2P04090 185 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 IFNA4P05014 189 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SELEP16581 610 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CPT2P23786 658 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 L1CAMP32004 1257 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2C18P33260 490 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PTGER2P43116 358 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms