RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SERPINC1P01008 464 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 KDELR1P24390 212 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 PDE1BQ01064 536 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 CCDC70Q6NSX1 233 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 KLHL35Q6PF15 583 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 B4GALNT4Q76KP1 1039 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 BPHLQ86WA6 291 aaPredicted RBP18.99■□□□□ 0.63
CLN3-262ENST00000637699 CPLX3Q8WVH0 158 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 SYN2Q92777 582 aaPredicted RBP18.99■□□□□ 0.63
CLN3-262ENST00000637699 MR1Q95460 341 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 ZNF514Q96K75 400 aaPredicted RBP18.99■□□□□ 0.63
CLN3-262ENST00000637699 SLC25A51Q9H1U9 297 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 CBX8Q9HC52 389 aa18.99■□□□□ 0.63
CLN3-262ENST00000637699 FARSAQ9Y285 508 aaKnown RBP18.99■□□□□ 0.63
CLN3-262ENST00000637699 PCDHGA9Q9Y5G4 932 aaKnown RBP18.99■□□□□ 0.63
CLN3-262ENST00000637699 UBA6A0AVT1 1052 aaPredicted RBP18.98■□□□□ 0.63
CLN3-262ENST00000637699 A1L4Q6 167 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 POP7O75817 140 aaKnown RBP18.98■□□□□ 0.63
CLN3-262ENST00000637699 MT-CYBP00156 380 aaPredicted RBP18.98■□□□□ 0.63
CLN3-262ENST00000637699 RNF224P0DH78 156 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 PLCL1Q15111 1095 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 RPE65Q16518 533 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 DNTTIP2Q5QJE6 756 aaKnown RBP18.98■□□□□ 0.63
CLN3-262ENST00000637699 AMZ2Q86W34 360 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 PLD5Q8N7P1 536 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 MLXIPLQ9NP71 852 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 LUZP4Q9P127 313 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 CENPEQ02224 2701 aa18.98■□□□□ 0.63
CLN3-262ENST00000637699 CPNE3O75131 537 aaKnown RBP18.97■□□□□ 0.63
CLN3-262ENST00000637699 PMPCBO75439 489 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 SCRG1O75711 98 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 SORBS2O94875 1100 aaKnown RBP18.97■□□□□ 0.63
CLN3-262ENST00000637699 NDST3O95803 873 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 PTGIRP43119 386 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 HSD11B2P80365 405 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 LAMB3Q13751 1172 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 GPR19Q15760 415 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 NPNTQ6UXI9 565 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 FAM83HQ6ZRV2 1179 aaPredicted RBP18.97■□□□□ 0.63
CLN3-262ENST00000637699 KMT5CQ86Y97 462 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 TMEM126BQ8IUX1 230 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 BRSK1Q8TDC3 778 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.97■□□□□ 0.63
CLN3-262ENST00000637699 TADA1Q96BN2 335 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 CASS4Q9NQ75 786 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 IMP3Q9NV31 184 aaKnown RBP18.97■□□□□ 0.63
CLN3-262ENST00000637699 UBP1Q9NZI7 540 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 SHANK1Q9Y566 2161 aa18.97■□□□□ 0.63
CLN3-262ENST00000637699 ITPR2Q14571 2701 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 A0A1W2PQJ5 194 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 LRRD1A4D1F6 860 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A9O60656 530 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 KCNJ13O60928 360 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A6P19224 532 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A1P22309 533 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A4P22310 534 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 CTSCP53634 463 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 GPS2Q13227 327 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 PDK1Q15118 436 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 INPP5JQ15735 1006 aaPredicted RBP18.96■□□□□ 0.63
CLN3-262ENST00000637699 EIF2S3LQ2VIR3 472 aaKnown RBP18.96■□□□□ 0.63
CLN3-262ENST00000637699 PRR30Q53SZ7 412 aaPredicted RBP18.96■□□□□ 0.63
CLN3-262ENST00000637699 RASGEF1AQ8N9B8 481 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 SLC38A9Q8NBW4 561 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 SRPK1Q96SB4 655 aaKnown RBP18.96■□□□□ 0.63
CLN3-262ENST00000637699 MFRPQ9BY79 579 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 CHST8Q9H2A9 424 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A7Q9HAW7 530 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A10Q9HAW8 530 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 UGT1A8Q9HAW9 530 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 GLOD4Q9HC38 313 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 IL26Q9NPH9 171 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 KCND1Q9NSA2 647 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 HRASLS2Q9NWW9 162 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 MAP10Q9P2G4 905 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 CFAP20Q9Y6A4 193 aaKnown RBP18.96■□□□□ 0.63
CLN3-262ENST00000637699 CREBBPQ92793 2442 aa18.96■□□□□ 0.63
CLN3-262ENST00000637699 TLCD2A6NGC4 264 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 APOL1O14791 398 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 GPR39O43194 453 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 PBLDP30039 288 aaPredicted RBP18.95■□□□□ 0.62
CLN3-262ENST00000637699 TUBB4BP68371 445 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 ZBED6P86452 979 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 DMPKQ09013 629 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 XRCC4Q13426 336 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 TUBB2AQ13885 445 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 NFE2L1Q14494 772 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 NOMO1Q15155 1222 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 CHRNA6Q15825 494 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 PAPD7Q5XG87 772 aaKnown RBP18.95■□□□□ 0.62
CLN3-262ENST00000637699 TMEM220Q6QAJ8 160 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 D2HGDHQ8N465 521 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 CD180Q99467 661 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 TUBB2BQ9BVA1 445 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 MAK16Q9BXY0 300 aaKnown RBP18.95■□□□□ 0.62
CLN3-262ENST00000637699 XPO4Q9C0E2 1151 aaKnown RBP18.95■□□□□ 0.62
CLN3-262ENST00000637699 CUEDC1Q9NWM3 386 aaPredicted RBP18.95■□□□□ 0.62
CLN3-262ENST00000637699 UVRAGQ9P2Y5 699 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 ZNF451Q9Y4E5 1061 aa18.95■□□□□ 0.62
CLN3-262ENST00000637699 OR5K3A6NET4 321 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms