RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 LRRC1Q9BTT6 524 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 ARID1BQ8NFD5 2236 aaPredicted RBP17.81■□□□□ 0.44
CLN3-239ENST00000628023 CD3EAPO15446 510 aaKnown RBP17.8■□□□□ 0.44
CLN3-239ENST00000628023 SNX2O60749 519 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 BANF1O75531 89 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 POLBP06746 335 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 MYF5P13349 255 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 PGAM1P18669 254 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 SLC7A5Q01650 507 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 ITIH4Q14624 930 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 ANKRD20A4Q4UJ75 823 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 DUPD1Q68J44 220 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 MRNIPQ6NTE8 343 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 AMZ2Q86W34 360 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 ZNF547Q8IVP9 402 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 SLC35F3Q8IY50 421 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 MMGT1Q8N4V1 131 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 BEND7Q8N7W2 519 aaPredicted RBP17.8■□□□□ 0.44
CLN3-239ENST00000628023 NAT14Q8WUY8 206 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 SIGLEC10Q96LC7 697 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 PWWP2AQ96N64 755 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 CARD6Q9BX69 1037 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 VPS37BQ9H9H4 285 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 SPATS2LQ9NUQ6 558 aaKnown RBP17.8■□□□□ 0.44
CLN3-239ENST00000628023 BPTFQ12830 3046 aa17.8■□□□□ 0.44
CLN3-239ENST00000628023 GOLGA8KD6RF30 607 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 GOLGA8TH3BQL2 631 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 PFDN6O15212 129 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 POP7O75817 140 aaKnown RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 USP1O94782 785 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 CKMT1AP12532 417 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 NSG1P42857 185 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 TTPAP49638 278 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 B4GALNT1Q00973 533 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 THOC5Q13769 683 aaKnown RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 MSS51Q4VC12 460 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 HP1BP3Q5SSJ5 553 aaPredicted RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 HES3Q5TGS1 186 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 SDCCAG8Q86SQ7 713 aaPredicted RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 AGGF1Q8N302 714 aaeCLIP17.79■□□□□ 0.44
CLN3-239ENST00000628023 NOA1Q8NC60 698 aaKnown RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 CCDC97Q96F63 343 aaPredicted RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 CFAP36Q96G28 342 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 SGSM3Q96HU1 749 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 EBNA1BP2Q99848 306 aaKnown RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 NAT9Q9BTE0 207 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 MARCH4Q9P2E8 410 aaPredicted RBP17.79■□□□□ 0.44
CLN3-239ENST00000628023 FAM8A1Q9UBU6 413 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 CHMP2BQ9UQN3 213 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 ST14Q9Y5Y6 855 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 AK5Q9Y6K8 562 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 NBEAQ8NFP9 2946 aa17.79■□□□□ 0.44
CLN3-239ENST00000628023 ITPR1Q14643 2758 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 IGLV3-16A0A075B6K0 115 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 CPED1A4D0V7 1026 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 PDZK1P1A8MUH7 402 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 ESPNB1AK53 854 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 F8W8V4 182 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 NDUFS3O75489 264 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 TTC4O95801 387 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 ARNTP27540 789 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 PRLHRP49683 370 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 E2F1Q01094 437 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 CAV1Q03135 178 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 PDIA2Q13087 525 aaKnown RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 COL9A2Q14055 689 aaPredicted RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 SEPT7Q16181 437 aaKnown RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 LONRF1Q17RB8 773 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 BCL7AQ4VC05 210 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 C14orf28Q4W4Y0 310 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 PACS1Q6VY07 963 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 CENPUQ71F23 418 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 EFL1Q7Z2Z2 1120 aaKnown RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 LDB1Q86U70 411 aaPredicted RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 TMEM135Q86UB9 458 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-239ENST00000628023 NAT6Q93015 286 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 FCRL3Q96P31 734 aaPredicted RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 C20orf96Q9NUD7 363 aaPredicted RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 GRHL1Q9NZI5 618 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 IL1RAPL1Q9NZN1 696 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 SLC23A2Q9UGH3 650 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 ZC3H7BQ9UGR2 993 aaKnown RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 PADI4Q9UM07 663 aa17.78■□□□□ 0.44
CLN3-239ENST00000628023 DNMT3AQ9Y6K1 912 aaPredicted RBP17.78■□□□□ 0.44
CLN3-239ENST00000628023 A0A087WV48 116 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 LY6G6EA0A0G2JKS1 128 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 ESYT3A0FGR9 886 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 QSOX1O00391 747 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 ZNF500O60304 480 aaPredicted RBP17.77■□□□□ 0.44
CLN3-239ENST00000628023 KCNJ13O60928 360 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 AP2A2O94973 939 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 HOXB3P14651 431 aaPredicted RBP17.77■□□□□ 0.44
CLN3-239ENST00000628023 SLC2A4P14672 509 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 IDSP22304 550 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 ACP1P24666 158 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 ELK3P41970 407 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 PLTPP55058 493 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 MAZP56270 477 aaKnown RBP17.77■□□□□ 0.44
CLN3-239ENST00000628023 GUCY2DQ02846 1103 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms