RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HEATR3Q7Z4Q2 680 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 USP37Q86T82 979 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 FBXO39Q8N4B4 442 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 RNF152Q8N8N0 203 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 FANCBQ8NB91 859 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 IFI44Q8TCB0 444 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 SCFD1Q8WVM8 642 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 NRG4Q8WWG1 115 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 ASB12Q8WXK4 309 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 BARD1Q99728 777 aaKnown RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 CHCHD6Q9BRQ6 235 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 CENPOQ9BU64 300 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 ACTRT3Q9BYD9 372 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 AMBRA1Q9C0C7 1298 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 PRSS22Q9GZN4 317 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 PDZD7Q9H5P4 517 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 DHX33Q9H6R0 707 aaKnown RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 RPF1Q9H9Y2 349 aaKnown RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 IRAK4Q9NWZ3 460 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 GCNT4Q9P109 453 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 SLC45A2Q9UMX9 530 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 ARHGAP26Q9UNA1 814 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 LIMCH1Q9UPQ0 1083 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 PKDREJQ9NTG1 2253 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 DIDO1Q9BTC0 2240 aaKnown RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 STK36Q9NRP7 1315 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 TRIP11Q15643 1979 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PLXNA2O75051 1894 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 KCNU1A8MYU2 1149 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 ISM1B1AKI9 464 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 SLC9A3R1O14745 358 aaPredicted RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 SLC16A6O15403 523 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PHGDHO43175 533 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 HOXC11O43248 304 aaPredicted RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 TIPRLO75663 272 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 CNTN5O94779 1100 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PLEKHA8P1O95397 391 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PTMAP06454 111 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 POLBP06746 335 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 GP1BAP07359 652 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 NHLRC4P0CG21 123 aaPredicted RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 HAPLN1P10915 354 aaPredicted RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 HGFP14210 728 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 HDCP19113 662 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PCSK6P29122 969 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 CSTF2P33240 577 aaKnown RBP eCLIP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 HSPA4P34932 840 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 LEPRP48357 1165 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 ART1P52961 327 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PMS2P11Q13670 270 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 FGL2Q14314 439 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 MXD4Q14582 209 aaPredicted RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 TAF5Q15542 800 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 C14orf28Q4W4Y0 310 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 SLC39A12Q504Y0 691 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 AARS2Q5JTZ9 985 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 SDHAF4Q5VUM1 108 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 CRTC1Q6UUV9 634 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 CYB5R4Q7L1T6 521 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF589Q86UQ0 364 aaPredicted RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 ZDHHC17Q8IUH5 632 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 FTSJ3Q8IY81 847 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 ATG16L2Q8NAA4 619 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 NDRG1Q92597 394 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 RAB24Q969Q5 203 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 PKNOX2Q96KN3 472 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 FAM227BQ96M60 508 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 FAM167BQ9BTA0 163 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 SORBS1Q9BX66 1292 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 TEKT3Q9BXF9 490 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 STK33Q9BYT3 514 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 TRIM9Q9C026 710 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 KRT23Q9C075 422 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 SLC38A7Q9NVC3 462 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 NSMCE4AQ9NXX6 385 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 LRFN1Q9P244 771 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 ACAD8Q9UKU7 415 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 CFAP20Q9Y6A4 193 aaKnown RBP4.44□□□□□ -1.7
LINC00540-201ENST00000611481 STON1Q9Y6Q2 735 aa4.44□□□□□ -1.7
LINC00540-201ENST00000611481 COL27A1Q8IZC6 1860 aaPredicted RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 NOTCH1P46531 2555 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 A0A087X0M5 115 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 A0A0D9SFI3 127 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 A0A1B0GX30 115 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 A0A1W2PPC4 97 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CPED1A4D0V7 1026 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 FAM47DPA6NHR8 397 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 HNRNPDLO14979 420 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CASC3O15234 703 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 MSH4O15457 936 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 IGHV4-34P06331 123 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CYP3A4P08684 503 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 PRKAR1AP10644 381 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 HARSP12081 509 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CNTFP26441 200 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 EEF1GP26641 437 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 OAS2P29728 719 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 RPL9P32969 192 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 PTGER4P35408 488 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 UGT1A5P35504 534 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms