RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ITGA9Q13797 1035 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 PTPRCAPQ14761 206 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 SPA17Q15506 151 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 RPE65Q16518 533 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 PPP2R5EQ16537 467 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 CRTC2Q53ET0 693 aaPredicted RBP7.47□□□□□ -1.21
CUX1-219ENST00000606749 GPRC6AQ5T6X5 926 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 CACHD1Q5VU97 1274 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 METRNLQ641Q3 311 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 C11orf63Q6NUN7 778 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 SARM1Q6SZW1 724 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 C6orf15Q6UXA7 325 aaPredicted RBP7.47□□□□□ -1.21
CUX1-219ENST00000606749 RANBP10Q6VN20 620 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 FAM83HQ6ZRV2 1179 aaPredicted RBP7.47□□□□□ -1.21
CUX1-219ENST00000606749 FAM92BQ6ZTR7 304 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 BBS12Q6ZW61 710 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 GLT6D1Q7Z4J2 308 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 PRSS42Q7Z5A4 293 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 DAAM2Q86T65 1068 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 CCDC50Q8IVM0 306 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 CCDC170Q8IYT3 715 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 ESX1Q8N693 406 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 DDHD1Q8NEL9 900 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 ZNF398Q8TD17 642 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 RSC1A1Q92681 617 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 ZDHHC12Q96GR4 267 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 QKIQ96PU8 341 aaKnown RBP eCLIP7.47□□□□□ -1.21
CUX1-219ENST00000606749 OR6C1Q96RD1 312 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 TRIM5Q9C035 493 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 TRIM4Q9C037 500 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 RAB33BQ9H082 229 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 SEMA5BQ9P283 1151 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 RSPH14Q9UHP6 348 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 PSMD13Q9UNM6 376 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.47□□□□□ -1.21
CUX1-219ENST00000606749 ARL5AQ9Y689 179 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 RPS6KL1Q9Y6S9 549 aa7.47□□□□□ -1.21
CUX1-219ENST00000606749 IGHV5-51A0A0C4DH38 117 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 RCCD1A6NED2 376 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 C5orf60A6NFR6 353 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 MGAT4DA6NG13 374 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 OR2AG2A6NM03 316 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 APOC4-APOC2K7ER74 178 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 STX7O15400 261 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 SPAG6O75602 509 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 ANXA9O76027 345 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 KIAA0754O94854 1291 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 NDUFA10O95299 355 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 APOC2P02655 101 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 FGF5P12034 268 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 FOLR1P15328 257 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 NELFEP18615 380 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 TCN2P20062 427 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 LPOP22079 712 aaPredicted RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 OAS2P29728 719 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 ADRA1AP35348 466 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 CAPZBP47756 277 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 GEMP55040 296 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 COPS2P61201 443 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 PPP1CAP62136 330 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 MC1RQ01726 317 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 MSLNQ13421 630 aaPredicted RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 NFE2L1Q14494 772 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 TAF1AQ15573 450 aaPredicted RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 DEFB109BQ30KR1 87 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 ANKRD20A2Q5SQ80 823 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 ANKRD20A1Q5TYW2 823 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 ANKRD20A3Q5VUR7 823 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 IRGCQ6NXR0 463 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 C16orf46Q6P387 395 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 PTRH1Q86Y79 214 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 RASGRP3Q8IV61 690 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 BEND7Q8N7W2 519 aaPredicted RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 GALNT6Q8NCL4 622 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 OR4K2Q8NGD2 314 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 GPR150Q8NGU9 434 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 APOBEC4Q8WW27 367 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 STARD8Q92502 1023 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 RNF31Q96EP0 1072 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 RBM41Q96IZ5 413 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 ELMO2Q96JJ3 720 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 SLC41A2Q96JW4 573 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 GORASP1Q9BQQ3 440 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 FICDQ9BVA6 458 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 FSD1LQ9BXM9 530 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 ZCCHC2Q9C0B9 1178 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 GBA3Q9H227 469 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 SMOXQ9NWM0 555 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 CROTQ9UKG9 612 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 PADI1Q9ULC6 663 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 EFR3BQ9Y2G0 817 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 KCTD3Q9Y597 815 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 PCDHA3Q9Y5H8 950 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 MRPS18BQ9Y676 258 aaKnown RBP7.46□□□□□ -1.22
CUX1-219ENST00000606749 DUSP10Q9Y6W6 482 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 TENM4Q6N022 2769 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 BSNQ9UPA5 3926 aa7.46□□□□□ -1.22
CUX1-219ENST00000606749 GOLGA6L3A6NEY3 463 aa7.45□□□□□ -1.22
CUX1-219ENST00000606749 C2orf81A6NN90 581 aa7.45□□□□□ -1.22
CUX1-219ENST00000606749 SGTAO43765 313 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms