RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 F8W8V4 182 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 PRMT5O14744 637 aaPredicted RBP19.02■□□□□ 0.64
UPF1-209ENST00000600310 PFDN6O15212 129 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 TNFSF14O43557 240 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 ERVK-10P10266 1014 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 CEACAM1P13688 526 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 ECHS1P30084 290 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 CARSP49589 748 aaKnown RBP19.02■□□□□ 0.64
UPF1-209ENST00000600310 HLTFQ14527 1009 aaKnown RBP eCLIP19.02■□□□□ 0.64
UPF1-209ENST00000600310 PUM1Q14671 1186 aaKnown RBP eCLIP19.02■□□□□ 0.64
UPF1-209ENST00000600310 HSP90AA5PQ58FG0 334 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 TEX35Q5T0J7 233 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 ZNF470Q6ECI4 717 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 CCDC25Q86WR0 208 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 SLC35F3Q8IY50 421 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 ARL10Q8N8L6 244 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 GPR156Q8NFN8 814 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 OR2L2Q8NH16 312 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 GSDMBQ8TAX9 411 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 GLMNQ92990 594 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 NCKIPSDQ9NZQ3 722 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 GULP1Q9UBP9 304 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 TBC1D29Q9UFV1 150 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 DNAJC16Q9Y2G8 782 aa19.02■□□□□ 0.64
UPF1-209ENST00000600310 ARID1BQ8NFD5 2236 aaPredicted RBP19.02■□□□□ 0.64
UPF1-209ENST00000600310 LY6G6EA0A0G2JKS1 128 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 C17orf113A0A1B0GUU1 675 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 A6NCN8 305 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 NOBOXO60393 691 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 S1PR4O95977 384 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 GSTM1P09488 218 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 OR56A5P0C7T3 313 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 RPS3P23396 243 aaKnown RBP eCLIP19.01■□□□□ 0.632e-7■■■■□ 25.4
UPF1-209ENST00000600310 MAGEA4P43358 317 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 NOVA1P51513 510 aaKnown RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 ADARP55265 1226 aaKnown RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 GSTM4Q03013 218 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 TRIP6Q15654 476 aaKnown RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 TRMT10BQ6PF06 316 aaKnown RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 CEP128Q6ZU80 1094 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 LRRC6Q86X45 466 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 C17orf82Q86X59 251 aaPredicted RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 DENND6AQ8IWF6 608 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 CNTN4Q8IWV2 1026 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 PALM2Q8IXS6 379 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 GABPB2Q8TAK5 448 aaPredicted RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 ZDHHC1Q8WTX9 485 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 LPGAT1Q92604 370 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 CCM2Q9BSQ5 444 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 TSPYL1Q9H0U9 437 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 P2RY12Q9H244 342 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 OSGEPL1Q9H4B0 414 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 VPS37BQ9H9H4 285 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 IARS2Q9NSE4 1012 aaKnown RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 EVA1BQ9NVM1 165 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 INTS10Q9NVR2 710 aaKnown RBP19.01■□□□□ 0.63
UPF1-209ENST00000600310 MOCS1Q9NZB8 636 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 SIRPGQ9P1W8 387 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 FBXO5Q9UKT4 447 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 VPS9D1Q9Y2B5 631 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 U3KQA8 63 aa19.01■□□□□ 0.63
UPF1-209ENST00000600310 DCDC2BA2VCK2 349 aa19■□□□□ 0.63
UPF1-209ENST00000600310 B4DGG1 531 aa19■□□□□ 0.63
UPF1-209ENST00000600310 KCNK5O95279 499 aa19■□□□□ 0.63
UPF1-209ENST00000600310 SLU7O95391 586 aaKnown RBP19■□□□□ 0.63
UPF1-209ENST00000600310 FTH1P02794 183 aa19■□□□□ 0.63
UPF1-209ENST00000600310 CKMT1AP12532 417 aa19■□□□□ 0.63
UPF1-209ENST00000600310 CKMT2P17540 419 aa19■□□□□ 0.63
UPF1-209ENST00000600310 IDSP22304 550 aa19■□□□□ 0.63
UPF1-209ENST00000600310 PBLDP30039 288 aaPredicted RBP19■□□□□ 0.63
UPF1-209ENST00000600310 SLC1A2P43004 574 aa19■□□□□ 0.63
UPF1-209ENST00000600310 RPIAP49247 311 aa19■□□□□ 0.63
UPF1-209ENST00000600310 TUBB4BP68371 445 aa19■□□□□ 0.63
UPF1-209ENST00000600310 CTBP1Q13363 440 aa19■□□□□ 0.63
UPF1-209ENST00000600310 NFE2L1Q14494 772 aa19■□□□□ 0.63
UPF1-209ENST00000600310 NR0B2Q15466 257 aa19■□□□□ 0.63
UPF1-209ENST00000600310 ZNF658BQ4V348 819 aaPredicted RBP19■□□□□ 0.63
UPF1-209ENST00000600310 METRNLQ641Q3 311 aa19■□□□□ 0.63
UPF1-209ENST00000600310 WASH2PQ6VEQ5 465 aa19■□□□□ 0.63
UPF1-209ENST00000600310 RELL1Q8IUW5 271 aa19■□□□□ 0.63
UPF1-209ENST00000600310 SFTPA2Q8IWL1 248 aa19■□□□□ 0.63
UPF1-209ENST00000600310 NAGSQ8N159 534 aa19■□□□□ 0.63
UPF1-209ENST00000600310 KYQ8NBH2 561 aa19■□□□□ 0.63
UPF1-209ENST00000600310 HM13Q8TCT9 377 aa19■□□□□ 0.63
UPF1-209ENST00000600310 C9orf72Q96LT7 481 aa19■□□□□ 0.63
UPF1-209ENST00000600310 FMO2Q99518 471 aa19■□□□□ 0.63
UPF1-209ENST00000600310 WASH6PQ9NQA3 447 aa19■□□□□ 0.63
UPF1-209ENST00000600310 COL5A1P20908 1838 aaPredicted RBP19■□□□□ 0.63
UPF1-209ENST00000600310 UBA6A0AVT1 1052 aaPredicted RBP18.99■□□□□ 0.63
UPF1-209ENST00000600310 SNX2O60749 519 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 EML2O95834 649 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 GSTA2P09210 222 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 MYF5P13349 255 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 F3P13726 295 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 SSTR1P30872 391 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 DUSP3P51452 185 aaPredicted RBP18.99■□□□□ 0.63
UPF1-209ENST00000600310 DAB2P98082 770 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 MGAT5Q09328 741 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 C14orf28Q4W4Y0 310 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 TEDDM1Q5T9Z0 273 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms