RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PSMD13Q9UNM6 376 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 ASXL3Q9C0F0 2248 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 ARHGEF17Q96PE2 2063 aaPredicted RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 KIR2DS5A0A0G2JLQ3 304 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 A0A0G2JNG1 304 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 OR52A4PA6NMU1 304 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 KIR2DS3K7RE56 304 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 OR1I1O60431 355 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 KCNJ13O60928 360 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 MLNP12872 115 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 SLC2A4P14672 509 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 ARNTP27540 789 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 SLC19A1P41440 591 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 UBE2IP63279 158 aaKnown RBP14.93□□□□□ -0.02
LIG1-219ENST00000600055 C2orf54Q08AI8 447 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 KIR2DS5Q14953 304 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 ISXQ2M1V0 245 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 FASTKD1Q53R41 847 aaKnown RBP14.93□□□□□ -0.02
LIG1-219ENST00000600055 IZUMO3Q5VZ72 239 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 CASC4Q6P4E1 433 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 ABRAXAS1Q6UWZ7 409 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 USP53Q70EK8 1073 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 B3GNT8Q7Z7M8 397 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 OR2L2Q8NH16 312 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.93□□□□□ -0.02
LIG1-219ENST00000600055 LINC00615Q96LM1 132 aaPredicted RBP14.93□□□□□ -0.02
LIG1-219ENST00000600055 RUNDC3BQ96NL0 473 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 SLC38A3Q99624 504 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 FOXP3Q9BZS1 431 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 XAB2Q9HCS7 855 aaKnown RBP14.93□□□□□ -0.02
LIG1-219ENST00000600055 SARS2Q9NP81 518 aaKnown RBP14.93□□□□□ -0.02
LIG1-219ENST00000600055 CPNE7Q9UBL6 633 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 ENTPD2Q9Y5L3 495 aa14.93□□□□□ -0.02
LIG1-219ENST00000600055 IGHV1OR21-1A0A087WYE8 117 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 SDR42E2A6NKP2 422 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 OR5K4A6NMS3 321 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 D6RAR5 112 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 GOLGA8KD6RF30 607 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 GOLGA8TH3BQL2 631 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 TCEA3O75764 348 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 POLBP06746 335 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 XRCC1P18887 633 aaPredicted RBP14.92□□□□□ -0.02
LIG1-219ENST00000600055 CD1CP29017 333 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 MAGEA3P43357 314 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 GPR3P46089 330 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 ITIH4Q14624 930 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 AGAP9Q5VTM2 703 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 METRNLQ641Q3 311 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 WASH2PQ6VEQ5 465 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 PACS1Q6VY07 963 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 SYDE1Q6ZW31 735 aaPredicted RBP14.92□□□□□ -0.02
LIG1-219ENST00000600055 CFAP206Q8IYR0 622 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 SPATA4Q8NEY3 305 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 WDR48Q8TAF3 677 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 ATXN7L3BQ96GX2 97 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 SGSM3Q96HU1 749 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 SIGLEC10Q96LC7 697 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 FCRL3Q96P31 734 aaPredicted RBP14.92□□□□□ -0.02
LIG1-219ENST00000600055 NUDT22Q9BRQ3 303 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 CCM2Q9BSQ5 444 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 TRIM31Q9BZY9 425 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 RDH14Q9HBH5 336 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 WASH6PQ9NQA3 447 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 CATSPERZQ9NTU4 200 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 KCNK4Q9NYG8 393 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 CFAP20Q9Y6A4 193 aaKnown RBP14.92□□□□□ -0.02
LIG1-219ENST00000600055 COL27A1Q8IZC6 1860 aaPredicted RBP14.92□□□□□ -0.02
LIG1-219ENST00000600055 RP1P56715 2156 aa14.92□□□□□ -0.02
LIG1-219ENST00000600055 A0A1W2PNU3 283 aaPredicted RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 AGRPO00253 132 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 CD3EAPO15446 510 aaKnown RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 BANF1O75531 89 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 VAPBO95292 243 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 VIPP01282 170 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 NSG1P42857 185 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 CFHR1Q03591 330 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 ZNF658BQ4V348 819 aaPredicted RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 LYPLAL1Q5VWZ2 237 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 TRIM48Q8IWZ4 208 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 SPDYE1Q8NFV5 336 aaPredicted RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 MDM1Q8TC05 714 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 HM13Q8TCT9 377 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 ZNF669Q96BR6 464 aaPredicted RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 PWWP2AQ96N64 755 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 TBC1D10AQ9BXI6 508 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 WWP1Q9H0M0 922 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 STN1Q9H668 368 aaKnown RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 IL1RAPL1Q9NZN1 696 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 SAMD15Q9P1V8 674 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 ANAPC5Q9UJX4 755 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 MAD1L1Q9Y6D9 718 aa14.91□□□□□ -0.02
LIG1-219ENST00000600055 ZFC3H1O60293 1989 aaKnown RBP14.91□□□□□ -0.02
LIG1-219ENST00000600055 PMS2P1A4D2B8 440 aa14.9□□□□□ -0.02
LIG1-219ENST00000600055 AP2A2O94973 939 aa14.9□□□□□ -0.02
LIG1-219ENST00000600055 CAPNS1P04632 268 aa14.9□□□□□ -0.02
LIG1-219ENST00000600055 HOXB3P14651 431 aaPredicted RBP14.9□□□□□ -0.02
LIG1-219ENST00000600055 CSF2RBP32927 897 aa14.9□□□□□ -0.02
LIG1-219ENST00000600055 HALP42357 657 aa14.9□□□□□ -0.02
LIG1-219ENST00000600055 MAPK9P45984 424 aa14.9□□□□□ -0.02
LIG1-219ENST00000600055 ARCN1P48444 511 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms