RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KLHL8Q9P2G9 620 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-211ENST00000597968 TMPRSS11EQ9UL52 423 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 ACSL5Q9ULC5 683 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 PADI1Q9ULC6 663 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 SPO11Q9Y5K1 396 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 ALG6Q9Y672 507 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 OR52A4PA6NMU1 304 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 AKR1B15C9JRZ8 316 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 MTX2O75431 263 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 SPAG6O75602 509 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 POP7O75817 140 aaKnown RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 ANXA9O76027 345 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 LCA5LO95447 670 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 SLC4A1P02730 911 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 TYRP1P17643 537 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 NFKB1P19838 968 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 OAS2P29728 719 aaKnown RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 DLSTP36957 453 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 SEPT7Q16181 437 aaKnown RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 KHDC1Q4VXA5 237 aaKnown RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 LACTB2Q53H82 288 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 ZNF648Q5T619 568 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 METRNLQ641Q3 311 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 ITPRIPL1Q6GPH6 555 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 TCTN3Q6NUS6 607 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 CCDC170Q8IYT3 715 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 ZNF567Q8N184 647 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 HEXDCQ8WVB3 486 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 RSC1A1Q92681 617 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 LINC00615Q96LM1 132 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 QKIQ96PU8 341 aaKnown RBP eCLIP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 FSD1LQ9BXM9 530 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 GPR87Q9BY21 358 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 BPIFA1Q9NP55 256 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 RARRES3Q9UL19 164 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 POLHQ9Y253 713 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 AAR2Q9Y312 384 aaKnown RBP13.34□□□□□ -0.27
TRIM28-211ENST00000597968 HYOU1Q9Y4L1 999 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 KCNMB2Q9Y691 235 aa13.34□□□□□ -0.27
TRIM28-211ENST00000597968 hCG_1818297A0A087WSY0 165 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 C5orf60A6NFR6 353 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 TLCD2A6NGC4 264 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 C2orf81A6NN90 581 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 MKRN2OSH3BPM6 223 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 APOC4-APOC2K7ER74 178 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 MATN2O00339 956 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 APOC2P02655 101 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 PRKAR1AP10644 381 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 TNNT1P13805 278 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 NDUFS1P28331 727 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 SEPHS1P49903 392 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 DRG2P55039 364 aaKnown RBP13.33□□□□□ -0.28
TRIM28-211ENST00000597968 GEMP55040 296 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 KLRB1Q12918 225 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 RPE65Q16518 533 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 PLA2G4EQ3MJ16 856 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 GPRC6AQ5T6X5 926 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 C11orf63Q6NUN7 778 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 IRGCQ6NXR0 463 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 BBS12Q6ZW61 710 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 B4GALNT4Q76KP1 1039 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 APLFQ8IW19 511 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-211ENST00000597968 UNC5BQ8IZJ1 945 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 RASGEF1AQ8N9B8 481 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 SIDT2Q8NBJ9 832 aaKnown RBP13.33□□□□□ -0.28
TRIM28-211ENST00000597968 LRRC45Q96CN5 670 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 ABHD17AQ96GS6 310 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 SYTL2Q9HCH5 934 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 LHX9Q9NQ69 397 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 UBP1Q9NZI7 540 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 FEZ2Q9UHY8 353 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-211ENST00000597968 CROTQ9UKG9 612 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 WDR37Q9Y2I8 494 aa13.33□□□□□ -0.28
TRIM28-211ENST00000597968 C17orf113A0A1B0GUU1 675 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 MGAT4DA6NG13 374 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 AGAP14A8MT82 685 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 STX7O15400 261 aaKnown RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 CREG1O75629 220 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 KIAA0754O94854 1291 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 MSL3P1P0C860 447 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 RALBP11234 206 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 PECAM1P16284 738 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 MSH3P20585 1137 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 LPOP22079 712 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 MAGEA1P43355 309 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 LEPRP48357 1165 aaKnown RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 SH3BP2P78314 561 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 HSD11B2P80365 405 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 FOXK1P85037 733 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 NFKB2Q00653 900 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 TBX2Q13207 712 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 TAF1AQ15573 450 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 CHRNA6Q15825 494 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 DEFB109BQ30KR1 87 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 BCL7AQ4VC05 210 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 TMEM220Q6QAJ8 160 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 RANBP10Q6VN20 620 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 ZC3H18Q86VM9 953 aaKnown RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 OOSP2Q86WS3 158 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 OR2L2Q8NH16 312 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms