RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LRRC8CQ8TDW0 803 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 LRRC59Q96AG4 307 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 CALML4Q96GE6 196 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 ABHD8Q96I13 439 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 DACH2Q96NX9 599 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 HGH1Q9BTY7 390 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 RAB6CQ9H0N0 254 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 UPF2Q9HAU5 1272 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SDF2L1Q9HCN8 221 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 DNAJB4Q9UDY4 337 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SEC63Q9UGP8 760 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 PCDHGA5Q9Y5G8 931 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 IGLV5-45A0A087WSX0 123 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 C5orf60A6NFR6 353 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 GJB3O75712 270 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 IGHV4-39P01824 125 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 TFAP2AP05549 437 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 SELLP14151 372 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 CSF2RAP15509 400 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 PHEXP78562 749 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 KRT33BQ14525 404 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 C19orf48Q6RUI8 117 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 TRMT1LQ7Z2T5 733 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 PIWIL4Q7Z3Z4 852 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 DCUN1D3Q8IWE4 304 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 TAGAPQ8N103 731 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 POC5Q8NA72 575 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 CEP295NLQ96MC4 621 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 UHRF2Q96PU4 802 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 FAM118AQ9NWS6 357 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 ARHGEF38Q9NXL2 777 aa4.33□□□□□ -1.72
SMCHD1-204ENST00000581226 A0A0B4J293 547 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 OR2A25A4D2G3 310 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 NDUFS4O43181 175 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 CTSVO60911 334 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 BAG4O95429 457 aaKnown RBP4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 IGKV3-20P01619 116 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 TUBBP07437 444 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 PORP16435 677 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 MCCP23508 829 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 NMBRP28336 390 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 TMF1P82094 1093 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 GAGE2BQ13066 116 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 GAGE2EQ4V326 116 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 ASPRV1Q53RT3 343 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 WDR78Q5VTH9 848 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 GAGE2AQ6NT46 116 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 PACS1Q6VY07 963 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 Q6ZTC4 211 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 AACSQ86V21 672 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 LONP2Q86WA8 852 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 TBC1D16Q8TBP0 767 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 ALG14Q96F25 216 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 SCRN2Q96FV2 425 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 ST6GAL2Q96JF0 529 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 RTN4RQ9BZR6 473 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 CCDC68Q9H2F9 335 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 DENND2DQ9H6A0 471 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 CHMP1AQ9HD42 196 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 TAS2R14Q9NYV8 317 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 GAGE2DQ9UEU5 116 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 AMACRQ9UHK6 382 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 PLAGL1Q9UM63 463 aa4.32□□□□□ -1.72
SMCHD1-204ENST00000581226 SCN5AQ14524 2016 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 ZNF644Q9H582 1327 aaPredicted RBP4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 A0A087WYN8 130 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 A0A0G2JNG1 304 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 PDE9AO76083 593 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 LIPFP07098 398 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 PRLRP16471 622 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 NRIP1P48552 1158 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 KRTAP10-7P60409 375 aaPredicted RBP4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 MBTD1Q05BQ5 628 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 EPS8Q12929 822 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 PRKG2Q13237 762 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 KIR2DS5Q14953 304 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 DUOXA1Q1HG43 343 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 NDUFAF5Q5TEU4 345 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 MEX3BQ6ZN04 569 aaKnown RBP4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 USP43Q70EL4 1123 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 INTS8Q75QN2 995 aaKnown RBP4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 GALNT5Q7Z7M9 940 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 PTOV1Q86YD1 416 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 SMPDL3BQ92485 455 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 SEMA4DQ92854 862 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 JAKMIP2Q96AA8 810 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 NEUROD6Q96NK8 337 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 OSGEPL1Q9H4B0 414 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 ZNF334Q9HCZ1 680 aaPredicted RBP4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 TXLNGQ9NUQ3 528 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 NSMCE4AQ9NXX6 385 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 PCDHGB4Q9UN71 923 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 TMEM5Q9Y2B1 443 aa4.31□□□□□ -1.72
SMCHD1-204ENST00000581226 LNP1A1A4G5 178 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 H0YIN7 160 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 PAPSS1O43252 624 aaPredicted RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 SLC22A3O75751 556 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 NR1D1P20393 614 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 SAT1P21673 171 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 ACSL1P33121 698 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms