RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SERGEFQ9UGK8 458 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 RAP2CQ9Y3L5 183 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 A0A1W2PP55 124 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 LRRC14BA6NHZ5 514 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 SYCE1LA8MT33 242 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 K7ESM1 405 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 ZNF195O14628 629 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 INPP4BO15327 924 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 SGTAO43765 313 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 MAGEC1O60732 1142 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 DCTN3O75935 186 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 UBOX5O94941 541 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 SOD1P00441 154 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 GFAPP14136 432 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 HOXB2P14652 356 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 IMPDH1P20839 514 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 SERPINB5P36952 375 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 GPR1P46091 355 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 HK3P52790 923 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 TAS2R38P59533 333 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 CREB5Q02930 508 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 GRSF1Q12849 480 aaKnown RBP eCLIP10.36□□□□□ -0.75
SS18-217ENST00000580958 SMAD2Q15796 467 aaKnown RBP10.36□□□□□ -0.75
SS18-217ENST00000580958 PFKFB4Q16877 469 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 SPRED3Q2MJR0 410 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 TTLL9Q3SXZ7 439 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 LDLRAP1Q5SW96 308 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 ZNF678Q5SXM1 525 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 RAET1GQ6H3X3 334 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 YTHDF3Q7Z739 585 aaKnown RBP10.36□□□□□ -0.75
SS18-217ENST00000580958 GPSM1Q86YR5 675 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 WDR75Q8IWA0 830 aaKnown RBP10.36□□□□□ -0.75
SS18-217ENST00000580958 MYO1HQ8N1T3 1032 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 FBXO39Q8N4B4 442 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 FITM2Q8N6M3 262 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 IL17RCQ8NAC3 791 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 AGR3Q8TD06 166 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 KCNV2Q8TDN2 545 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 GANCQ8TET4 914 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 WNT2BQ93097 391 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 FUBP1Q96AE4 644 aaKnown RBP10.36□□□□□ -0.75
SS18-217ENST00000580958 L3HYPDHQ96EM0 354 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 CNDP1Q96KN2 507 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 CDX2Q99626 313 aaPredicted RBP10.36□□□□□ -0.75
SS18-217ENST00000580958 SLC6A17Q9H1V8 727 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 GSTO2Q9H4Y5 243 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 NUDT4Q9NZJ9 180 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 KLHL42Q9P2K6 505 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 HEY2Q9UBP5 337 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 ZDHHC2Q9UIJ5 367 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 CNOT6Q9ULM6 557 aaKnown RBP10.36□□□□□ -0.75
SS18-217ENST00000580958 PCDHGA10Q9Y5H3 936 aa10.36□□□□□ -0.75
SS18-217ENST00000580958 CCDC189A1A4V9 331 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 IGLON5A6NGN9 336 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 NCF1BA6NI72 391 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 OR2AG2A6NM03 316 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 NCF1CA8MVU1 366 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 ANKRD65E5RJM6 399 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 TSPAN6O43657 245 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 AP1G1O43747 822 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 RNASEH2AO75792 299 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 SUPT7LO94864 414 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 AP2A2O94973 939 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 PCDH8O95206 1070 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 SIX3O95343 332 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 NCF1P14598 390 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 FOSL2P15408 326 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 ALOX15P16050 662 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 TSPAN8P19075 237 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 AOAHP28039 575 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 SERPINB3P29508 390 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 EEF1DP29692 281 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 CCR7P32248 378 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 RPL14P50914 215 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 CTSCP53634 463 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 HERVK_113P63132 956 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 MRPS21P82921 87 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 ZBTB16Q05516 673 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 CCDC15Q0P6D6 951 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 SETDB1Q15047 1291 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 LACTB2Q53H82 288 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 SBSNQ6UWP8 590 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 CYHR1Q6ZMK1 362 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 FRMD7Q6ZUT3 714 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 TRMT11Q7Z4G4 463 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 ADAMTSL2Q86TH1 951 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 MTDHQ86UE4 582 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 TRIM74Q86UV6 250 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 ALYREFQ86V81 257 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 PHYKPLQ8IUZ5 450 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 BEND7Q8N7W2 519 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 RASGEF1AQ8N9B8 481 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 SKA1Q96BD8 255 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 ERP27Q96DN0 273 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 EBF4Q9BQW3 602 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 SIKE1Q9BRV8 207 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 ERVK-6Q9BXR3 956 aa10.35□□□□□ -0.75
SS18-217ENST00000580958 FAM126AQ9BYI3 521 aaPredicted RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 MKRN2Q9H000 416 aaKnown RBP10.35□□□□□ -0.75
SS18-217ENST00000580958 WWP1Q9H0M0 922 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms