RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 DDX56Q9NY93 547 aaKnown RBP20.64■□□□□ 0.89
VPS53-216ENST00000574029 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.64■□□□□ 0.89
VPS53-216ENST00000574029 FAM153AQ9UHL3 310 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 DNMT3AQ9Y6K1 912 aaPredicted RBP20.64■□□□□ 0.89
VPS53-216ENST00000574029 COL12A1Q99715 3063 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 PIPSLA2A3N6 862 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 AKR1B10O60218 316 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 POP7O75817 140 aaKnown RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 FOLR1P15328 257 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 SPAM1P38567 509 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 WNT3AP56704 352 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 WASHC5Q12768 1159 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 TUBB3Q13509 450 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 CHRNA6Q15825 494 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 RPE65Q16518 533 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 SIRPB2Q5JXA9 342 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 LDLRAP1Q5SW96 308 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 KLHL35Q6PF15 583 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 MFSD7Q6UXD7 560 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 BZW1Q7L1Q6 419 aaKnown RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 BPHLQ86WA6 291 aaPredicted RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 RHOT1Q8IXI2 618 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 TEX19Q8NA77 164 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 SIDT2Q8NBJ9 832 aaKnown RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 DDHD1Q8NEL9 900 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 TFB1MQ8WVM0 346 aaKnown RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 ZCCHC2Q9C0B9 1178 aaKnown RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 HACD3Q9P035 362 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 IL17CQ9P0M4 197 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 SAE1Q9UBE0 346 aaPredicted RBP20.63■□□□□ 0.89
VPS53-216ENST00000574029 TLK1Q9UKI8 766 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 RARRES3Q9UL19 164 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 FLNCQ14315 2725 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 RELNP78509 3460 aa20.63■□□□□ 0.89
VPS53-216ENST00000574029 MTSS1O43312 755 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A9O60656 530 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A6P19224 532 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 NFKB1P19838 968 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A1P22309 533 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A4P22310 534 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 CA5AP35218 305 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 CDKN2BP42772 138 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 SLC1A1P43005 524 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 CTSCP53634 463 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 TAZQ16635 292 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 ODF2Q5BJF6 829 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 PWWP2BQ6NUJ5 590 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 FAM83HQ6ZRV2 1179 aaPredicted RBP20.62■□□□□ 0.89
VPS53-216ENST00000574029 ASB18Q6ZVZ8 466 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 KMT5CQ86Y97 462 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 APLFQ8IW19 511 aaPredicted RBP20.62■□□□□ 0.89
VPS53-216ENST00000574029 FAM26EQ8N5C1 309 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A7Q9HAW7 530 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A10Q9HAW8 530 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 UGT1A8Q9HAW9 530 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 MAN2B2Q9Y2E5 1009 aa20.62■□□□□ 0.89
VPS53-216ENST00000574029 GPR39O43194 453 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 TPM3P06753 285 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 GP1BBP13224 206 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 PECAM1P16284 738 aaPredicted RBP20.61■□□□□ 0.89
VPS53-216ENST00000574029 CHRNA4P43681 627 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 ACY1Q03154 408 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 TRIM14Q14142 442 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 KCNAB1Q14722 419 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 TMEM220Q6QAJ8 160 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 FAM151BQ6UXP7 276 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 MRGPRX2Q96LB1 330 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 FCRL5Q96RD9 977 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 CD180Q99467 661 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 CHP1Q99653 195 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 MAP3K3Q99759 626 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 GPR87Q9BY21 358 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 ACTL8Q9H568 366 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 AKIRIN1Q9H9L7 192 aaPredicted RBP20.61■□□□□ 0.89
VPS53-216ENST00000574029 SPTLC3Q9NUV7 552 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 ZNHIT6Q9NWK9 470 aaKnown RBP20.61■□□□□ 0.89
VPS53-216ENST00000574029 PSMD13Q9UNM6 376 aa20.61■□□□□ 0.89
VPS53-216ENST00000574029 GLYATL1P3A0A0U1RQE8 302 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 GAPDHSO14556 408 aaPredicted RBP20.6■□□□□ 0.89
VPS53-216ENST00000574029 EBLN1P0CF75 366 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 MTHFD1P11586 935 aaKnown RBP20.6■□□□□ 0.89
VPS53-216ENST00000574029 SEMA5AQ13591 1074 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 ITGA9Q13797 1035 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 TFDP2Q14188 446 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 NFE2L1Q14494 772 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 TCEAL1Q15170 157 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 SLC1A5Q15758 541 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 PPP2R5EQ16537 467 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 GPRC6AQ5T6X5 926 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 METRNLQ641Q3 311 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 CERS6Q6ZMG9 384 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 GLT6D1Q7Z4J2 308 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 ATCAYQ86WG3 371 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 SLC25A41Q8N5S1 370 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 SEC14L1Q92503 715 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 OXNAD1Q96HP4 312 aaPredicted RBP20.6■□□□□ 0.89
VPS53-216ENST00000574029 ZNF514Q96K75 400 aaPredicted RBP20.6■□□□□ 0.89
VPS53-216ENST00000574029 RUFY1Q96T51 708 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 SMOXQ9NWM0 555 aa20.6■□□□□ 0.89
VPS53-216ENST00000574029 HYOU1Q9Y4L1 999 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms