RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 MC2RQ01718 297 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 ITGA9Q13797 1035 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 GPR18Q14330 331 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 SPARCL1Q14515 664 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 TMEM164Q5U3C3 297 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 ANKS6Q68DC2 871 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 TMEM220Q6QAJ8 160 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 SYCE1Q8N0S2 351 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 FAM71DQ8N9W8 422 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 GPR150Q8NGU9 434 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 GDAP1Q8TB36 358 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 NKD1Q969G9 470 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 RTP4Q96DX8 246 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 TBL1YQ9BQ87 522 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 SLC39A1Q9NY26 324 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 PCDHGA4Q9Y5G9 962 aa17.1■□□□□ 0.33
SMG6-214ENST00000573827 DNMT3AQ9Y6K1 912 aaPredicted RBP17.1■□□□□ 0.33
SMG6-214ENST00000573827 A8MU76 341 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 STMND1H3BQB6 276 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 SRP72O76094 671 aaKnown RBP17.09■□□□□ 0.33
SMG6-214ENST00000573827 VIPP01282 170 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 TYRP1P17643 537 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 PSMA3P25788 255 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 TNNT3P45378 269 aaPredicted RBP17.09■□□□□ 0.33
SMG6-214ENST00000573827 MAPK9P45984 424 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 GTF2H3Q13889 308 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 NFE2L1Q14494 772 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 PARP6Q2NL67 630 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 ZNF658BQ4V348 819 aaPredicted RBP17.09■□□□□ 0.33
SMG6-214ENST00000573827 SNAP47Q5SQN1 464 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 METRNLQ641Q3 311 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 AMZ2Q86W34 360 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 RNF10Q8N5U6 811 aaKnown RBP17.09■□□□□ 0.33
SMG6-214ENST00000573827 UBL4BQ8N7F7 174 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 BEND7Q8N7W2 519 aaPredicted RBP17.09■□□□□ 0.33
SMG6-214ENST00000573827 TTC13Q8NBP0 860 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 RSC1A1Q92681 617 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 SGF29Q96ES7 293 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 C9orf72Q96LT7 481 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 APMAPQ9HDC9 416 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 FBXO8Q9NRD0 319 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 PILRAQ9UKJ1 303 aa17.09■□□□□ 0.33
SMG6-214ENST00000573827 OR2AG2A6NM03 316 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 C2orf81A6NN90 581 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 ZNF189O75820 626 aaPredicted RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 STK10O94804 968 aaKnown RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 UBXN7O94888 489 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 CETN2P41208 172 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 CAPZBP47756 277 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 LEPRP48357 1165 aaKnown RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 RAB15P59190 212 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 PRPSAP1Q14558 356 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 OASLQ15646 514 aaKnown RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 RPE65Q16518 533 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 LINC00303Q3SY05 128 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 BCL7AQ4VC05 210 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 FAM129CQ86XR2 697 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 PLXDC1Q8IUK5 500 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 RBM12BQ8IXT5 1001 aaKnown RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 LINC00615Q96LM1 132 aaPredicted RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 FERMT1Q9BQL6 677 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 ASPSCR1Q9BZE9 553 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 ZCCHC2Q9C0B9 1178 aaKnown RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 SEMA5BQ9P283 1151 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 EPHA6Q9UF33 1036 aa17.08■□□□□ 0.32
SMG6-214ENST00000573827 FEZ2Q9UHY8 353 aaPredicted RBP17.08■□□□□ 0.32
SMG6-214ENST00000573827 FLNCQ14315 2725 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 IGLV3-16A0A075B6K0 115 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 TRBV5-4A0A0C4DH59 114 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 CCL22O00626 93 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 KIF1CO43896 1103 aaKnown RBP17.07■□□□□ 0.32
SMG6-214ENST00000573827 VCLP18206 1134 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 PPP1CAP62136 330 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 LY6DQ14210 128 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 MANEAQ5SRI9 462 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 FNBP1LQ5T0N5 605 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 DCAF12Q5T6F0 453 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 TIPARPQ7Z3E1 657 aaKnown RBP17.07■□□□□ 0.32
SMG6-214ENST00000573827 EXD3Q8N9H8 876 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 CCDC112Q8NEF3 446 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 JPH3Q8WXH2 748 aaPredicted RBP17.07■□□□□ 0.32
SMG6-214ENST00000573827 ATG4AQ8WYN0 398 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 ZNF514Q96K75 400 aaPredicted RBP17.07■□□□□ 0.32
SMG6-214ENST00000573827 TTC25Q96NG3 672 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 PPP1R2P1Q96PQ5 205 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 CTRCQ99895 268 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 TMEM121Q9BTD3 319 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 RAB33BQ9H082 229 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 ASB8Q9H765 288 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 KLHL3Q9UH77 587 aa17.07■□□□□ 0.32
SMG6-214ENST00000573827 SPENQ96T58 3664 aaKnown RBP17.07■□□□□ 0.32
SMG6-214ENST00000573827 MGAT4DA6NG13 374 aa17.06■□□□□ 0.32
SMG6-214ENST00000573827 H7C0S8 307 aa17.06■□□□□ 0.32
SMG6-214ENST00000573827 TOX3O15405 576 aaPredicted RBP17.06■□□□□ 0.32
SMG6-214ENST00000573827 CAPN5O15484 640 aaPredicted RBP17.06■□□□□ 0.32
SMG6-214ENST00000573827 CRTAMO95727 393 aa17.06■□□□□ 0.32
SMG6-214ENST00000573827 DLGAP3O95886 979 aa17.06■□□□□ 0.32
SMG6-214ENST00000573827 CDKN1CP49918 316 aaPredicted RBP17.06■□□□□ 0.32
SMG6-214ENST00000573827 LONRF2Q1L5Z9 754 aa17.06■□□□□ 0.32
SMG6-214ENST00000573827 DET1Q7L5Y6 550 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms