RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RPUSD3Q6P087 351 aaKnown RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 WDR59Q6PJI9 974 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 BBS5Q8N3I7 341 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 NPWQ8N729 165 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 GBP5Q96PP8 586 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 SMIM14Q96QK8 99 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 EIF3CQ99613 913 aaKnown RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 SPOCK3Q9BQ16 436 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 C17orf62Q9BQA9 187 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 C11orf70Q9BRQ4 267 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 BTRCQ9Y297 605 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 JMJD1CQ15652 2540 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 KMOO15229 486 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 LDB2O43679 373 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 CYP1A1P04798 512 aaPredicted RBP17.62■□□□□ 0.41
CLK3-227ENST00000570296 IDSP22304 550 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 RPL10P27635 214 aaKnown RBP17.62■□□□□ 0.41
CLK3-227ENST00000570296 PBX1P40424 430 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 ZNF143P52747 638 aaPredicted RBP17.62■□□□□ 0.41
CLK3-227ENST00000570296 GSCP56915 257 aaPredicted RBP17.62■□□□□ 0.41
CLK3-227ENST00000570296 ADCY2Q08462 1091 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 AIMP2Q13155 320 aaKnown RBP17.62■□□□□ 0.41
CLK3-227ENST00000570296 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.62■□□□□ 0.416e-8■□□□□ 8.3
CLK3-227ENST00000570296 PTCHD3Q3KNS1 767 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 PLA2G4EQ3MJ16 856 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 CRTC3Q6UUV7 619 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 SELENOOQ9BVL4 669 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 FAM83DQ9H4H8 585 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 HOOK1Q9UJC3 728 aaKnown RBP17.62■□□□□ 0.41
CLK3-227ENST00000570296 DNAJC16Q9Y2G8 782 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 NEU2Q9Y3R4 380 aa17.62■□□□□ 0.41
CLK3-227ENST00000570296 OR5K3A6NET4 321 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 C19orf84I3L1E1 186 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 PEX11BO96011 259 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 CYP2A7P20853 494 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 AGXTP21549 392 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 CA7P43166 264 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 AGAP7PQ5VUJ5 663 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 LRRTM4Q86VH4 590 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 ZNF677Q86XU0 584 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 CEP97Q8IW35 865 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 EPS8L1Q8TE68 723 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 MTFMTQ96DP5 389 aaKnown RBP17.61■□□□□ 0.41
CLK3-227ENST00000570296 CNDP1Q96KN2 507 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 AGAP4Q96P64 663 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 TRIM56Q9BRZ2 755 aaKnown RBP17.61■□□□□ 0.41
CLK3-227ENST00000570296 SYTL2Q9HCH5 934 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 TRIM39Q9HCM9 518 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 SOHLH2Q9NX45 425 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 MAN1B1Q9UKM7 699 aa17.61■□□□□ 0.41
CLK3-227ENST00000570296 PRRC2AP48634 2157 aaKnown RBP17.6■□□□□ 0.41
CLK3-227ENST00000570296 RGSL1A5PLK6 1076 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 TMEM200CA6NKL6 621 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 DAPK3O43293 454 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 CLDN7O95471 211 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 ERCC2P18074 760 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 FOLR3P41439 243 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 KIR3DL1P43629 444 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 SPINT3P49223 89 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 EPHB1P54762 984 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 DRG2P55039 364 aaKnown RBP17.6■□□□□ 0.41
CLK3-227ENST00000570296 ZNF789Q5FWF6 425 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 GFRALQ6UXV0 394 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 RFX8Q6ZV50 586 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 ADGRG6Q86SQ4 1221 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 TTC30BQ8N4P2 665 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 NR4A3Q92570 626 aa17.6■□□□□ 0.41
CLK3-227ENST00000570296 CSPG4Q6UVK1 2322 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 FANCGO15287 622 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 CD63P08962 238 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 HBQ1P09105 142 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 HALP42357 657 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 MAXP61244 160 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 PTP4A2Q12974 167 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 PRKD1Q15139 912 aaPredicted RBP17.59■□□□□ 0.41
CLK3-227ENST00000570296 CYP2A13Q16696 494 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 PPP1R15BQ5SWA1 713 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 ZNF385CQ66K41 422 aaPredicted RBP17.59■□□□□ 0.41
CLK3-227ENST00000570296 DPY19L2P1Q6NXN4 242 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 TMEM207Q6UWW9 146 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 PPP1R32Q7Z5V6 425 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 TGIF2LYQ8IUE0 185 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 C3orf20Q8ND61 904 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 OR1L3Q8NH93 324 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 SLC30A5Q8TAD4 765 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 LYSMD1Q96S90 227 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 CNPY3Q9BT09 278 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 TLR10Q9BXR5 811 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 EPS8L2Q9H6S3 715 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 HRASLS2Q9NWW9 162 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 AP4E1Q9UPM8 1137 aa17.59■□□□□ 0.41
CLK3-227ENST00000570296 PTRH2Q9Y3E5 179 aaKnown RBP17.59■□□□□ 0.41
CLK3-227ENST00000570296 SIGLEC16A6NMB1 481 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 MASP2O00187 686 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 SLC25A14O95258 325 aaPredicted RBP17.58■□□□□ 0.4
CLK3-227ENST00000570296 LCA5LO95447 670 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 MSL3P1P0C860 447 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 SMSP52788 366 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 ZNF569Q5MCW4 686 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 ZNF648Q5T619 568 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms