RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 C6orf106Q9H6K1 298 aaPredicted RBP30.11■■■□□ 2.41
CTCF-203ENST00000566078 ALG9Q9H6U8 611 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 PHPT1Q9NRX4 125 aaPredicted RBP30.11■■■□□ 2.41
CTCF-203ENST00000566078 WSB2Q9NYS7 404 aaPredicted RBP30.11■■■□□ 2.41
CTCF-203ENST00000566078 COPG2Q9UBF2 871 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 TSR3Q9UJK0 312 aaKnown RBP30.11■■■□□ 2.41
CTCF-203ENST00000566078 MID2Q9UJV3 735 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 VEGFDO43915 354 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 TRIM23P36406 574 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 DENND6BQ8NEG7 585 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 IER2Q9BTL4 223 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 TMEM98Q9Y2Y6 226 aa30.11■■■□□ 2.41
CTCF-203ENST00000566078 VCANP13611 3396 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 BIRC5O15392 142 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 RBP1P09455 135 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 SBK3P0C264 359 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 NEFHP12036 1026 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 CPA3P15088 417 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 AOAHP28039 575 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 RGS4P49798 205 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 ATP6V0D1P61421 351 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 TMEM151AQ8N4L1 468 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 CAMKK1Q8N5S9 505 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 FRMD1Q8N878 549 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 RDH11Q8TC12 318 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 ELMO1Q92556 727 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 EDAQ92838 391 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 FUBP1Q96AE4 644 aaKnown RBP30.1■■■□□ 2.41
CTCF-203ENST00000566078 PTERQ96BW5 349 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 EPHX3Q9H6B9 360 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 KLHL42Q9P2K6 505 aa30.1■■■□□ 2.41
CTCF-203ENST00000566078 IGHV1OR15-9A0A0B4J2B8 117 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 G3V2L1 256 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 MYL2P10916 166 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 ZNF8P17098 575 aaPredicted RBP30.09■■■□□ 2.41
CTCF-203ENST00000566078 KCNA4P22459 653 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 DGKAP23743 735 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 BOP1Q14137 746 aaKnown RBP30.09■■■□□ 2.41
CTCF-203ENST00000566078 BCL7AQ4VC05 210 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 ACSBG2Q5FVE4 666 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 KIAA0895LQ68EN5 471 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 ISCA2Q86U28 154 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 TRAPPC5Q8IUR0 188 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 NUDCD3Q8IVD9 361 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 GPR174Q9BXC1 333 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 TECTAO75443 2155 aa30.09■■■□□ 2.41
CTCF-203ENST00000566078 NPEPPSL1A6NEC2 478 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 C10orf142B7Z368 130 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 LATO43561 262 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 FSBPO95073 299 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 MYCLP1P12525 358 aaPredicted RBP30.08■■■□□ 2.41
CTCF-203ENST00000566078 BGNP21810 368 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 HNRNPA2B1P22626 353 aaKnown RBP30.08■■■□□ 2.41
CTCF-203ENST00000566078 ALDH3A1P30838 453 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 CXCL12P48061 93 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 PIWIL4Q7Z3Z4 852 aaKnown RBP30.08■■■□□ 2.41
CTCF-203ENST00000566078 FAM160A2Q8N612 972 aaPredicted RBP30.08■■■□□ 2.41
CTCF-203ENST00000566078 LRRC8CQ8TDW0 803 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 CCM2Q9BSQ5 444 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 IKZF3Q9UKT9 509 aa30.08■■■□□ 2.41
CTCF-203ENST00000566078 TARM1B6A8C7 271 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 MAGEA9P43362 315 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 CCR5P51681 352 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 OR4D1Q15615 310 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 ZYG11AQ6WRX3 759 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 C10orf107Q8IVU9 208 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 FOXJ1Q92949 421 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 ZNF514Q96K75 400 aaPredicted RBP30.07■■■□□ 2.4
CTCF-203ENST00000566078 TFB2MQ9H5Q4 396 aaKnown RBP30.07■■■□□ 2.4
CTCF-203ENST00000566078 SIRPGQ9P1W8 387 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 BTN3A1O00481 513 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 FPGTO14772 594 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 KPNA5O15131 536 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 LILRB5O75023 590 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 IGHV4-34P06331 123 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 PBLDP30039 288 aaPredicted RBP30.07■■■□□ 2.4
CTCF-203ENST00000566078 CCR3P51677 355 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 TJAP1Q5JTD0 557 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 CRTC3Q6UUV7 619 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 MYO1HQ8N1T3 1032 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 KIAA1191Q96A73 305 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 PDLIM5Q96HC4 596 aaKnown RBP30.07■■■□□ 2.4
CTCF-203ENST00000566078 APOOQ9BUR5 198 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 DLGAP2Q9P1A6 1054 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 FAM8A1Q9UBU6 413 aa30.07■■■□□ 2.4
CTCF-203ENST00000566078 ZFC3H1O60293 1989 aaKnown RBP30.06■■■□□ 2.4
CTCF-203ENST00000566078 TCP11X1B4DZS4 312 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 CDC7O00311 574 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 PI15O43692 258 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 CBSLP0DN79 551 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 TAC1P20366 129 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 CBSP35520 551 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 CLDN2P57739 230 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 HSPA14Q0VDF9 509 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 PLEKHS1Q5SXH7 462 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 RHEBL1Q8TAI7 183 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 ZNF75CPQ92670 426 aaPredicted RBP30.06■■■□□ 2.4
CTCF-203ENST00000566078 CA5BQ9Y2D0 317 aa30.06■■■□□ 2.4
CTCF-203ENST00000566078 LRP4O75096 1905 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 TMEM202A6NGA9 273 aa30.05■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms