RNA–Protein interactions for RNA: ENST00000565966.5

HERPUD1-210, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 5

Gene HERPUD1, Length 798 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-210	ENST00000565966	ATXN7L3B	Q96GX2	97 aa		13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	TMEM74	Q96NL1	305 aa		13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	SERPINB12	Q96P63	405 aa		13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	SLC38A3	Q99624	504 aa		13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	TRIM51	Q9BSJ1	452 aa		13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	KIFC1	Q9BW19	673 aa		13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	MRM3	Q9HC36	420 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	XAB2	Q9HCS7	855 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	SARS2	Q9NP81	518 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.6	□□□□□ -0.23
HERPUD1-210	ENST00000565966	PRR19	A6NJB7	356 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	TAF4	O00268	1085 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	POP7	O75817	140 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	CPNE6	O95741	557 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	TUBB4A	P04350	444 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	XRCC1	P18887	633 aa	Predicted RBP	13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ACRV1	P26436	265 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	NMBR	P28336	390 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	MAGEA3	P43357	314 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	LSS	P48449	732 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	PDX1	P52945	283 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	HHEX	Q03014	270 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	C2orf54	Q08AI8	447 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	DMPK	Q09013	629 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	CLPP	Q16740	277 aa	Predicted RBP	13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	IZUMO3	Q5VZ72	239 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	AFTPH	Q6ULP2	937 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ABRAXAS1	Q6UWZ7	409 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	WASH2P	Q6VEQ5	465 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	TAS2R42	Q7RTR8	314 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ZNF572	Q7Z3I7	529 aa	Predicted RBP	13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	PCGF5	Q86SE9	256 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	SERPINA9	Q86WD7	417 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	LSMEM2	Q8N112	164 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	NAT14	Q8WUY8	206 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ZNF592	Q92610	1267 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	SGF29	Q96ES7	293 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	DCUN1D1	Q96GG9	259 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	COPS8	Q99627	209 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	POLR1B	Q9H9Y6	1135 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	WASH6P	Q9NQA3	447 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	TREX1	Q9NSU2	369 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	ZDHHC3	Q9NYG2	299 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	KCNK4	Q9NYG8	393 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	CPNE7	Q9UBL6	633 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	CDC23	Q9UJX2	597 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	SOX13	Q9UN79	622 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	FREM2	Q5SZK8	3169 aa		13.59	□□□□□ -0.23
HERPUD1-210	ENST00000565966	IGLV3-16	A0A075B6K0	115 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	IGHV1OR21-1	A0A087WYE8	117 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	CCDC187	A0A096LP49	1063 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	KLHL33	A6NCF5	533 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	PDZK1P1	A8MUH7	402 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	CFAP99	D6REC4	459 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SGTA	O43765	313 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	URI1	O94763	535 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	MPO	P05164	745 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	ATP1B2	P14415	290 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	RPL10	P27635	214 aa	Known RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	CD1C	P29017	333 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	CCKBR	P32239	447 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	INHBC	P55103	352 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	GABRE	P78334	506 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	PRAME	P78395	509 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	GPLD1	P80108	840 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	MRPS25	P82663	173 aa	Known RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	ZFP36L1	Q07352	338 aa	Known RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SQSTM1	Q13501	440 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	DBN1	Q16643	649 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	AMZ1	Q400G9	498 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	FNBP1L	Q5T0N5	605 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	AGAP9	Q5VTM2	703 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	CES3	Q6UWW8	571 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	DET1	Q7L5Y6	550 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	B3GNT8	Q7Z7M8	397 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	AGGF1	Q8N302	714 aa	eCLIP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	OR6P1	Q8NGX9	317 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	WDR36	Q8NI36	951 aa	Known RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	MFSD3	Q96ES6	412 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	LIN37	Q96GY3	246 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SGSM3	Q96HU1	749 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	FOXP3	Q9BZS1	431 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	STRADB	Q9C0K7	418 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SCHIP1	Q9P0W5	487 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SATB2	Q9UPW6	733 aa		13.58	□□□□□ -0.24
HERPUD1-210	ENST00000565966	FAM187A	A6NFU0	413 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	MGAT4D	A6NG13	374 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SDR42E2	A6NKP2	422 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	KIF2A	O00139	706 aa	Predicted RBP	13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	RAD51C	O43502	376 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	BRINP1	O60477	761 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	VIP	P01282	170 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	BRAF	P15056	766 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	SLC19A1	P41440	591 aa		13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	DRG2	P55039	364 aa	Known RBP	13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	CKAP4	Q07065	602 aa	Known RBP	13.57	□□□□□ -0.24
HERPUD1-210	ENST00000565966	EIF3I	Q13347	325 aa	Known RBP	13.57	□□□□□ -0.24

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