RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CASS4Q9NQ75 786 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 POT1Q9NUX5 634 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 ZDHHC3Q9NYG2 299 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 MGAT4DA6NG13 374 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 LILRA5A6NI73 299 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PRR19A6NJB7 356 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 OR2AG2A6NM03 316 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 F8W8V4 182 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 QSOX1O00391 747 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PLD2O14939 933 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 GPR39O43194 453 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 JMJD7P0C870 316 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 ZSCAN5DPP0CG00 497 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 ATP1B2P14415 290 aaPredicted RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 PSMA3P25788 255 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 CD1CP29017 333 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PPARGP37231 505 aaPredicted RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 NPY2RP49146 381 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PDX1P52945 283 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 CTSCP53634 463 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 BCL7AQ4VC05 210 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 FNBP1LQ5T0N5 605 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PHF19Q5T6S3 580 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 LYPLAL1Q5VWZ2 237 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 ZNF449Q6P9G9 518 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 USP53Q70EK8 1073 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 TAS2R42Q7RTR8 314 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 B3GNT8Q7Z7M8 397 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 GLIS1Q8NBF1 620 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PPHLN1Q8NEY8 458 aaKnown RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 OR4D9Q8NGE8 314 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 SNIP1Q8TAD8 396 aaKnown RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 ACTRT1Q8TDG2 376 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 GRK7Q8WTQ7 553 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 CXorf40BQ96DE9 158 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 LINC00615Q96LM1 132 aaPredicted RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 SLC46A1Q96NT5 459 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 BBC3Q96PG8 261 aaPredicted RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 FOXP3Q9BZS1 431 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 PIH1D1Q9NWS0 290 aaKnown RBP13.16□□□□□ -0.3
CLK3-216ENST00000564468 BFARQ9NZS9 450 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 ACSL5Q9ULC5 683 aa13.16□□□□□ -0.3
CLK3-216ENST00000564468 TRBV5-4A0A0C4DH59 114 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 HGSO14964 777 aaPredicted RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 ITGA2BP08514 1039 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 GSTM1P09488 218 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 TCP1P17987 556 aaKnown RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 TPSB2P20231 275 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 ACRV1P26436 265 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 RPL10P27635 214 aaKnown RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 ABCG1P45844 678 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 LIMK2P53671 638 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 PCBP4P57723 403 aaKnown RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 UBE2IP63279 158 aaKnown RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 GSTM4Q03013 218 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 TPSAB1Q15661 275 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 SEPT7Q16181 437 aaKnown RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 PCID2Q5JVF3 399 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 TSTD2Q5T7W7 516 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 METRNLQ641Q3 311 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 TMEM71Q6P5X7 295 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 FOXR1Q6PIV2 292 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 WDR74Q6RFH5 385 aaPredicted RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 DET1Q7L5Y6 550 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 PRUNE1Q86TP1 453 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 SERPINA9Q86WD7 417 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 SLITRK4Q8IW52 837 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 ZNF248Q8NDW4 579 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 OR2L2Q8NH16 312 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 SGF29Q96ES7 293 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 CCDC97Q96F63 343 aaPredicted RBP13.15□□□□□ -0.3
CLK3-216ENST00000564468 MS4A14Q96JA4 679 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 NUDT22Q9BRQ3 303 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 IL22Q9GZX6 179 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 FAM96AQ9H5X1 160 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 RDH14Q9HBH5 336 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 SNX12Q9UMY4 172 aa13.15□□□□□ -0.3
CLK3-216ENST00000564468 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 IGLV3-16A0A075B6K0 115 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 C17orf113A0A1B0GUU1 675 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 CCL22O00626 93 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 CASC3O15234 703 aaKnown RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 TNFSF15O95150 251 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 KRT14P02533 472 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 PBLDP30039 288 aaPredicted RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 CA5AP35218 305 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 COILP38432 576 aaPredicted RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 EIF2S3P41091 472 aaKnown RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 SLC19A1P41440 591 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 PRLHRP49683 370 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 DRG2P55039 364 aaKnown RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 PRAMEP78395 509 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 ITIH4Q14624 930 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 GSE1Q14687 1217 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 CYP1B1Q16678 543 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 CCDC38Q502W7 563 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 NKAIN2Q5VXU1 208 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 ARMC3Q5W041 872 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 CCDC137Q6PK04 289 aaKnown RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 AFTPHQ6ULP2 937 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms