RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 PDIA2Q13087 525 aaKnown RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 BIRC2Q13490 618 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 THOC5Q13769 683 aaKnown RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 HLTFQ14527 1009 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP3-205ENST00000557884 FASTKD3Q14CZ7 662 aaKnown RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 LONRF1Q17RB8 773 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 DNTTIP2Q5QJE6 756 aaKnown RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 ZNF470Q6ECI4 717 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 MRNIPQ6NTE8 343 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 NEPROQ6NW34 567 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 DHRS13Q6UX07 377 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 PACS1Q6VY07 963 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 SDCCAG8Q86SQ7 713 aaPredicted RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 ARL14Q8N4G2 192 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 LILRA3Q8N6C8 439 aaPredicted RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP3-205ENST00000557884 SLC37A2Q8TED4 501 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 CCDC74AQ96AQ1 378 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 SCHIP1Q9P0W5 487 aaPredicted RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 ZC3H7BQ9UGR2 993 aaKnown RBP14.09□□□□□ -0.15
USP3-205ENST00000557884 RNF215Q9Y6U7 377 aa14.09□□□□□ -0.15
USP3-205ENST00000557884 UBA6A0AVT1 1052 aaPredicted RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 EME2A4GXA9 379 aaPredicted RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 A6NCN8 305 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 MGAT4DA6NG13 374 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 PRR19A6NJB7 356 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 ESPNB1AK53 854 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 CASC3O15234 703 aaKnown RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 AP2A2O94973 939 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 F3P13726 295 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 IDSP22304 550 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 PPARGP37231 505 aaPredicted RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 CLCNKAP51800 687 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 FOXC1Q12948 553 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 HSP90AA5PQ58FG0 334 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 SPANXN3Q5MJ09 141 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 ZDHHC24Q6UX98 284 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 NAPRTQ6XQN6 538 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 CFAP206Q8IYR0 622 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 Q8N9G6 341 aaPredicted RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 LRRN4CLQ8ND94 238 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 FBXO36Q8NEA4 188 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 OR2L2Q8NH16 312 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 FBXO25Q8TCJ0 367 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 MAPK15Q8TD08 544 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 NAT6Q93015 286 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 ART4Q93070 314 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 CCDC3Q9BQI4 270 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 CCM2Q9BSQ5 444 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 NAT9Q9BTE0 207 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 SYNDIG1Q9H7V2 258 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 PLAC1Q9HBJ0 212 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 SAYSD1Q9NPB0 183 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 DMGDHQ9UI17 866 aaKnown RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 RABGEF1Q9UJ41 708 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 PSMD13Q9UNM6 376 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 WDR37Q9Y2I8 494 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 TEX264Q9Y6I9 313 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 DNMT3AQ9Y6K1 912 aaPredicted RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 NCOR2Q9Y618 2525 aa14.08□□□□□ -0.16
USP3-205ENST00000557884 ZNF106Q9H2Y7 1883 aaKnown RBP14.08□□□□□ -0.16
USP3-205ENST00000557884 ARID1BQ8NFD5 2236 aaPredicted RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 OR52A4PA6NMU1 304 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 RHPN2P1A8MT19 583 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 IQCF5A8MTL0 148 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 ZNF500O60304 480 aaPredicted RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 DKK1O94907 266 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 TTC4O95801 387 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 TOP3BO95985 862 aaKnown RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 OR56A5P0C7T3 313 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 ERVK-10P10266 1014 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 BRAFP15056 766 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 EIF3BP55884 814 aaKnown RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 DMPKQ09013 629 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 CTBP1Q13363 440 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 IYDQ6PHW0 289 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 XKR5Q6UX68 686 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 UNC5AQ6ZN44 842 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 CAPN12Q6ZSI9 719 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 CENPUQ71F23 418 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 KCNMB4Q86W47 210 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 CCDC25Q86WR0 208 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 C17orf82Q86X59 251 aaPredicted RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 ZNF761Q86XN6 746 aaPredicted RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 DENND6AQ8IWF6 608 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 ZBED8Q8IZ13 594 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 SFRP1Q8N474 314 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 CHCHD4Q8N4Q1 142 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 GPR150Q8NGU9 434 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 HM13Q8TCT9 377 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 LKAAEAR1Q8TD35 194 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 LRRC39Q96DD0 335 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 LINC00615Q96LM1 132 aaPredicted RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 VPS37BQ9H9H4 285 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 EPB41L5Q9HCM4 733 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 FBXO6Q9NRD1 293 aaPredicted RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 IARS2Q9NSE4 1012 aaKnown RBP14.07□□□□□ -0.16
USP3-205ENST00000557884 LRIT1Q9P2V4 623 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 PCDHGA1Q9Y5H4 931 aa14.07□□□□□ -0.16
USP3-205ENST00000557884 FAM169AQ9Y6X4 670 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms