RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PRSS56P0CW18 603 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 NCF2P19878 526 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 GKP32189 559 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CDKN1CP49918 316 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 PSMD7P51665 324 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CLCN7P51798 805 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 COPAP53621 1224 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 INHBCP55103 352 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 DCTN2Q13561 401 aaKnown RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CBX2Q14781 532 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 ZNF805Q5CZA5 627 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 FAM78AQ5JUQ0 283 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 ANKS6Q68DC2 871 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 FAM109BQ6ICB4 259 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 ERAP2Q6P179 960 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 METTL2BQ6P1Q9 378 aaKnown RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 NUDT18Q6ZVK8 323 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 GPSM1Q86YR5 675 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 ETFBKMTQ8IXQ9 262 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CLYBLQ8N0X4 340 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 MYO1HQ8N1T3 1032 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CPSF7Q8N684 471 aaKnown RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 PTGR2Q8N8N7 351 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 FGF13Q92913 245 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 MRPL38Q96DV4 380 aaKnown RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 PHF21BQ96EK2 531 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 LINGO1Q96FE5 620 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 KLHL32Q96NJ5 620 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 SMIM14Q96QK8 99 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 COPS8Q99627 209 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CCT7Q99832 543 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CYP4F12Q9HCS2 524 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 ELOVL2Q9NXB9 296 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 ARMCX1Q9P291 453 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CNOT11Q9UKZ1 510 aaKnown RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 FNDC3AQ9Y2H6 1198 aaKnown RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 IGLV3-16A0A075B6K0 115 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 EDDM13A0A1B0GTR0 161 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NEMP2A6NFY4 417 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PSMD11O00231 422 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 GIPC1O14908 333 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 OR1I1O60431 355 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PFDN1O60925 122 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 VPS4BO75351 444 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ENO1P06733 434 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 OR56A5P0C7T3 313 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ZCCHC18P0CG32 403 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ENO3P13929 434 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 EIF2DP41214 584 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 SPINT3P49223 89 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 HPCAP84074 193 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 HERC3Q15034 1050 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 OR4D1Q15615 310 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 CHRNA6Q15825 494 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 GEN1Q17RS7 908 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 MMEL1Q495T6 779 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 SETMARQ53H47 684 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TTC23LQ6PF05 361 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ZSWIM9Q86XI8 627 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NAT16Q8N8M0 369 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 SIDT2Q8NBJ9 832 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 FUBP1Q96AE4 644 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PBX4Q9BYU1 374 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 UNKQ9C0B0 810 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 MEAF6Q9HAF1 191 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ZFP14Q9HCL3 533 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 B4GALT6Q9UBX8 382 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 WDR37Q9Y2I8 494 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NUMBLQ9Y6R0 609 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 WASF2Q9Y6W5 498 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ZNF106Q9H2Y7 1883 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 HEPACAM2A8MVW5 462 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PRR5-ARHGAP8B1AHC4 643 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 RAD51BO15315 384 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 RNASEH1O60930 286 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TULP3O75386 442 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ECI2O75521 394 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 AP2A2O94973 939 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TSPAN12O95859 305 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 CHEK2O96017 543 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 RPS17P08708 135 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 THRAP10827 490 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 MTHFD2P13995 350 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 KCNA5P22460 613 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NR1H2P55055 460 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ARHGAP8P85298 464 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PTSQ03393 145 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 LCP2Q13094 533 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PDK3Q15120 406 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 MAPRE2Q15555 327 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TSNQ15631 228 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PFKFB4Q16877 469 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 SLC9B1Q4ZJI4 515 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 UNC50Q53HI1 259 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 CDKL4Q5MAI5 379 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 RARS2Q5T160 578 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 OGFRL1Q5TC84 451 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TMEM215Q68D42 235 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 UGT2A3Q6UWM9 527 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ATG14Q6ZNE5 492 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms