RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CHRAC1Q9NRG0 131 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 POT1Q9NUX5 634 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 KCNK4Q9NYG8 393 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CPNE7Q9UBL6 633 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 ANAPC5Q9UJX4 755 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 ACSL5Q9ULC5 683 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 ENTPD2Q9Y5L3 495 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 AK5Q9Y6K8 562 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 C17orf113A0A1B0GUU1 675 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 DUX1O43812 170 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 MGAT1P26572 445 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 RPL10P27635 214 aaKnown RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 PBLDP30039 288 aaPredicted RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 CCKBRP32239 447 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 PPM1FP49593 454 aaPredicted RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 TERF1P54274 439 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 EPHA4P54764 986 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 ETF1P62495 437 aaKnown RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 UBE2IP63279 158 aaKnown RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 EIF3IQ13347 325 aaKnown RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 SQSTM1Q13501 440 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 DBN1Q16643 649 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 AMZ1Q400G9 498 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 AARS2Q5JTZ9 985 aaKnown RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 METRNLQ641Q3 311 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 ZNF449Q6P9G9 518 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 PACS1Q6VY07 963 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 ZNF534Q76KX8 674 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 RBM12BQ8IXT5 1001 aaKnown RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 PPIL6Q8IXY8 311 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 LSMEM2Q8N112 164 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 HM13Q8TCT9 377 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 CXorf40BQ96DE9 158 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 LIN37Q96GY3 246 aaPredicted RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 ZNF778Q96MU6 729 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 KIFC1Q9BW19 673 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 EPB41L1Q9H4G0 881 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 SLC2A6Q9UGQ3 507 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 ASIC3Q9UHC3 531 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 ATXN7L1Q9ULK2 861 aaPredicted RBP12.26□□□□□ -0.45
SLIRP-209ENST00000557342 SOX13Q9UN79 622 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 PCDHB1Q9Y5F3 818 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 KIF26BQ2KJY2 2108 aa12.26□□□□□ -0.45
SLIRP-209ENST00000557342 SPEGQ15772 3267 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 IGHV1OR21-1A0A087WYE8 117 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 CCDC187A0A096LP49 1063 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 MAGEB16A2A368 324 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 OR51F1A6NGY5 319 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 SGTAO43765 313 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 PRSS56P0CW18 603 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 CD1CP29017 333 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 SLC19A1P41440 591 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 LSSP48449 732 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 DRG2P55039 364 aaKnown RBP12.25□□□□□ -0.45
SLIRP-209ENST00000557342 CRADDP78560 199 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 CYP4F3Q08477 520 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 PTK6Q13882 451 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 NFE2L1Q14494 772 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 ANKRD22Q5VYY1 191 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 KLHL7Q8IXQ5 586 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 PIANPQ8IYJ0 282 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 NAT8LQ8N9F0 302 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 WDR36Q8NI36 951 aaKnown RBP12.25□□□□□ -0.45
SLIRP-209ENST00000557342 MDM1Q8TC05 714 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 TMEM159Q96B96 161 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 ATXN7L3BQ96GX2 97 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 CCM2Q9BSQ5 444 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 ZMYND15Q9H091 742 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 POLR1BQ9H9Y6 1135 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 TREX1Q9NSU2 369 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 CATSPERZQ9NTU4 200 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 SYBUQ9NX95 663 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 AKAP7Q9P0M2 348 aaPredicted RBP12.25□□□□□ -0.45
SLIRP-209ENST00000557342 SCHIP1Q9P0W5 487 aaPredicted RBP12.25□□□□□ -0.45
SLIRP-209ENST00000557342 SAMD15Q9P1V8 674 aa12.25□□□□□ -0.45
SLIRP-209ENST00000557342 ZNF624Q9P2J8 865 aaPredicted RBP12.25□□□□□ -0.45
SLIRP-209ENST00000557342 LILRA5A6NI73 299 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 SDR42E2A6NKP2 422 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 DNALI1O14645 258 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 CASC3O15234 703 aaKnown RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 TMEM63AO94886 807 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 FTH1P02794 183 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 CAPNS1P04632 268 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 SLC35G4P0C7Q5 338 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 OR56A5P0C7T3 313 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 BRAFP15056 766 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 PAMP19021 973 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 NMBRP28336 390 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 MLLT3P42568 568 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 TTPAP49638 278 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 PDX1P52945 283 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 GABREP78334 506 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 DR1Q01658 176 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 ZFP36L1Q07352 338 aaKnown RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 TRA2AQ13595 282 aaKnown RBP eCLIP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 DHX34Q14147 1143 aaKnown RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 CLCA4Q14CN2 919 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 ST3GAL2Q16842 350 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 KCTD19Q17RG1 926 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 C3orf38Q5JPI3 329 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms