RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	CTSC	P53634	463 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	BOP1	Q14137	746 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ELOC	Q15369	112 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	CCDC6	Q16204	474 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	TTLL9	Q3SXZ7	439 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	PRRT3	Q5FWE3	981 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF789	Q5FWF6	425 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	FBXO38	Q6PIJ6	1188 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	CROCCP2	Q86T23	111 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	FSTL5	Q8N475	847 aa	Predicted RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	BEND7	Q8N7W2	519 aa	Predicted RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ELMO1	Q92556	727 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	CCDC97	Q96F63	343 aa	Predicted RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	LINC00615	Q96LM1	132 aa	Predicted RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	BIRC8	Q96P09	236 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	TIMM29	Q9BSF4	260 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	AARSD1	Q9BTE6	412 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	GTPBP2	Q9BX10	602 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	GSDMC	Q9BYG8	508 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	OSGEPL1	Q9H4B0	414 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SPAST	Q9UBP0	616 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	FAM8A1	Q9UBU6	413 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	TRMT6	Q9UJA5	497 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SLC39A10	Q9ULF5	831 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	DOLK	Q9UPQ8	538 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	C17orf113	A0A1B0GUU1	675 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	MGAT4D	A6NG13	374 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	GOLGA6L10	A6NI86	522 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	RASGRF2	O14827	1237 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	FOXD2	O60548	495 aa	Predicted RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	CDH16	O75309	829 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	NIPSNAP2	O75323	286 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	FAM155B	O75949	473 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	ITGB6	P18564	788 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	GABRB3	P28472	473 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	SLCO1A2	P46721	670 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	POU4F1	Q01851	419 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	PLOD1	Q02809	727 aa	Predicted RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	PDAP1	Q13442	181 aa	Known RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	USP10	Q14694	798 aa	Known RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	HLA-B	Q31612	363 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	CTSL3P	Q5NE16	218 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	PLA2G2C	Q5R387	149 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	HECTD2	Q5U5R9	776 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	HDX	Q7Z353	690 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF547	Q8IVP9	402 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	KRT222	Q8N1A0	295 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	SDR16C5	Q8N3Y7	309 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	RIBC1	Q8N443	379 aa	Predicted RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	OR2L2	Q8NH16	312 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	HM13	Q8TCT9	377 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	NAT14	Q8WUY8	206 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	ASZ1	Q8WWH4	475 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	TMEM159	Q96B96	161 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	FAM136A	Q96C01	138 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	MTBP	Q96DY7	904 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	GPR22	Q99680	433 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	ROPN1B	Q9BZX4	212 aa	Predicted RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	GAREM1	Q9H706	876 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	ROPN1	Q9HAT0	212 aa	Predicted RBP	12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	KLC4	Q9NSK0	619 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	DNAJC16	Q9Y2G8	782 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	PRSS21	Q9Y6M0	314 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	CEP192	Q8TEP8	1941 aa		12.31	□□□□□ -0.44
ABCD4-223	ENST00000555904	TNRC6B	Q9UPQ9	1833 aa	Known RBP	12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	TLDC2	A0PJX2	215 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	NEMP2	A6NFY4	417 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	IQCF5	A8MTL0	148 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	LIN7A	O14910	233 aa	Predicted RBP	12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	SCAMP1	O15126	338 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	TCEA3	O75764	348 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	FUCA1	P04066	466 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	SNRPA	P09012	282 aa	Known RBP	12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF806	P0C7X5	589 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	STMN1	P16949	149 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ENG	P17813	658 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ACTR1B	P42025	376 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	SERPINB8	P50452	374 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	CCT8	P50990	548 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ACTR1A	P61163	376 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	IRX4	P78413	519 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ARHGAP8	P85298	464 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	HSPA14	Q0VDF9	509 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	CASP8	Q14790	479 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	TCEA2	Q15560	299 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF423	Q2M1K9	1284 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	KRT71	Q3SY84	523 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	RBM20	Q5T481	1227 aa	Known RBP	12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	MROH9	Q5TGP6	573 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF549	Q6P9A3	640 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	SLC30A9	Q6PML9	568 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ADGRD1	Q6QNK2	874 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	LRIG3	Q6UXM1	1119 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	RAPH1	Q70E73	1250 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	TAF8	Q7Z7C8	310 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	GKN2	Q86XP6	184 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	CFAP206	Q8IYR0	622 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZBTB2	Q8N680	514 aa		12.3	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF548	Q8NEK5	533 aa	Predicted RBP	12.3	□□□□□ -0.44

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