RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DBN1Q16643 649 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 SKIDA1Q1XH10 827 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 KIF26BQ2KJY2 2108 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 PHF19Q5T6S3 580 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 TSTD2Q5T7W7 516 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 FOXR1Q6PIV2 292 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 XKR5Q6UX68 686 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 WASH2PQ6VEQ5 465 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF534Q76KX8 674 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 TAS2R42Q7RTR8 314 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 SERPINA9Q86WD7 417 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 TRIM48Q8IWZ4 208 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 PPHLN1Q8NEY8 458 aaKnown RBP13.47□□□□□ -0.25
SHMT2-219ENST00000555563 OR10G6Q8NH81 332 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 WDR36Q8NI36 951 aaKnown RBP13.47□□□□□ -0.25
SHMT2-219ENST00000555563 SH3KBP1Q96B97 665 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC74BQ96LY2 380 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF778Q96MU6 729 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 WASH6PQ9NQA3 447 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 POT1Q9NUX5 634 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 ZDHHC3Q9NYG2 299 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 TMEM9Q9P0T7 183 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 FAM8A1Q9UBU6 413 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 DNMT3AQ9Y6K1 912 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-219ENST00000555563 UNC13CQ8NB66 2214 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 PRAMEF33A0A0G2JMD5 474 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 IGHV5-10-1A0A0J9YXX1 117 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 GOLGA6L10A0A0M3HER8 536 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TCRBV7S3A2A0A539 114 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 MGAT4DA6NG13 374 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 LILRA5A6NI73 299 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TMX2-CTNND1H3BSU7 103 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 PLD2O14939 933 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 DUX1O43812 170 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 VIPP01282 170 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 KRT14P02533 472 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 HGFP14210 728 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TCP1P17987 556 aaKnown RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 XRCC1P18887 633 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TPSB2P20231 275 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 COILP38432 576 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 SLC19A1P41440 591 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 MAPK9P45984 424 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 PPM1FP49593 454 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TERF1P54274 439 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 EPHA4P54764 986 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 CRADDP78560 199 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 ACVR1Q04771 509 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC173Q0VFZ6 552 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 EIF3IQ13347 325 aaKnown RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 SQSTM1Q13501 440 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 LAMB3Q13751 1172 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 KCNJ11Q14654 390 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 CLCA4Q14CN2 919 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 C16orf72Q14CZ0 275 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TPSAB1Q15661 275 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC137Q6PK04 289 aaKnown RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 IGF2-ASQ6U949 168 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 AFTPHQ6ULP2 937 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF574Q6ZN55 896 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 RAB11FIP2Q7L804 512 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 LSMEM2Q8N112 164 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 OR4D9Q8NGE8 314 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 SNIP1Q8TAD8 396 aaKnown RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 HEXDCQ8WVB3 486 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 HDAC10Q969S8 669 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 AHCYL2Q96HN2 611 aaKnown RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 LINC00615Q96LM1 132 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-219ENST00000555563 DCBLD2Q96PD2 775 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 TBC1D10AQ9BXI6 508 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 RIMKLBQ9ULI2 386 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 PSMD13Q9UNM6 376 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 NEU2Q9Y3R4 380 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 LOXL2Q9Y4K0 774 aa13.46□□□□□ -0.25
SHMT2-219ENST00000555563 APC2O95996 2303 aa13.46□□□□□ -0.26
SHMT2-219ENST00000555563 TMEM63AO94886 807 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 TNFSF15O95150 251 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 GOT2P00505 430 aaKnown RBP13.45□□□□□ -0.26
SHMT2-219ENST00000555563 THRAP10827 490 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 ATP1B2P14415 290 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-219ENST00000555563 MPSTP25325 297 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 RBMS1P29558 406 aaKnown RBP13.45□□□□□ -0.26
SHMT2-219ENST00000555563 HALP42357 657 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 MAGEA6P43360 314 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 FNTAP49354 379 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 ERVPABLB-1P60509 514 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 CDK16Q00536 496 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 ANKRD22Q5VYY1 191 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 METRNLQ641Q3 311 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 TMEM26Q6ZUK4 368 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 NLRP9Q7RTR0 991 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 FBXO39Q8N4B4 442 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 LILRA3Q8N6C8 439 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-219ENST00000555563 CLDN19Q8N6F1 224 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 RCBTB1Q8NDN9 531 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 GPR150Q8NGU9 434 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 OR2L2Q8NH16 312 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 HM13Q8TCT9 377 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 FGF11Q92914 225 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms