RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PPP2R2DQ66LE6 453 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 GET4Q7L5D6 327 aaPredicted RBP25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 PPP2R3CQ969Q6 453 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 NXPE3Q969Y0 559 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 ZFYVE19Q96K21 471 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 MARK4Q96L34 752 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 SPATA16Q9BXB7 569 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 TMPRSS11EQ9UL52 423 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 E2F3O00716 465 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 FFAR2O15552 330 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 VPS4BO75351 444 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 ESRRBO95718 433 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 RALGDSQ12967 914 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 RAB30Q15771 203 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 TMEM184AQ6ZMB5 413 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 WDR60Q8WVS4 1066 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 DCLRE1BQ9H816 532 aa25.95■■□□□ 1.74
CCDC88C-205ENST00000553403 PRRT4C9JH25 899 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 CRCPO75575 148 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 PRNPP04156 253 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 ENO3P13929 434 aaPredicted RBP25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 FCARP24071 287 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 FOXA1P55317 472 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 PKNOX1P55347 436 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 MAPRE2Q15555 327 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 C16orf89Q6UX73 402 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 TRAM1L1Q8N609 369 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 NAT14Q8WUY8 206 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 ZNF382Q96SR6 550 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 RDH14Q9HBH5 336 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 SLC7A8Q9UHI5 535 aa25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 EIF2B4Q9UI10 523 aaKnown RBP25.94■■□□□ 1.74
CCDC88C-205ENST00000553403 PIP5K1BO14986 540 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 CCNT2O60583 730 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 UROSP10746 265 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 IRX1P78414 480 aaPredicted RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 RBBP7Q16576 425 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 KHDC1Q4VXA5 237 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 FBXO48Q5FWF7 155 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 ERAP2Q6P179 960 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 PGM2L1Q6PCE3 622 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 SYVN1Q86TM6 617 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 RAVER1Q8IY67 606 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 TIFAQ96CG3 184 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 CLPTM1LQ96KA5 538 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 C3orf30Q96M34 536 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 HPS4Q9NQG7 708 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 NDE1Q9NXR1 346 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 UTP6Q9NYH9 597 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 CD84Q9UIB8 345 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 PTBP2Q9UKA9 531 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 EDDM13A0A1B0GTR0 161 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 EPOPA6NHQ4 379 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 GIPC1O14908 333 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 ATP1B2P14415 290 aaPredicted RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 MMP12P39900 470 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 PTK2BQ14289 1009 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 FNDC3BQ53EP0 1204 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 HENMT1Q5T8I9 393 aaKnown RBP25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 GPRIN3Q6ZVF9 776 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 TECPR1Q7Z6L1 1165 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 DEFB107AQ8IZN7 70 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 KYQ8NBH2 561 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 TMIEQ8NEW7 156 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 DCUN1D1Q96GG9 259 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 IGFLR1Q9H665 355 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 AKTIPQ9H8T0 292 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 PFDN4Q9NQP4 134 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 CDH7Q9ULB5 785 aa25.93■■□□□ 1.74
CCDC88C-205ENST00000553403 KIF26AQ9ULI4 1882 aaPredicted RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 OTOL1A6NHN0 477 aaPredicted RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 CFAP99D6REC4 459 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 AP2A2O94973 939 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 CHEK2O96017 543 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 GBX1Q14549 363 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 HNRNPA1L2Q32P51 320 aaKnown RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 METTL2BQ6P1Q9 378 aaKnown RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 Q6ZVL8 140 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 ZNF366Q8N895 744 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 OR8D1Q8WZ84 308 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 MRPL38Q96DV4 380 aaKnown RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 KCNA7Q96RP8 456 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 ZSCAN5AQ9BUG6 496 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 TUBB1Q9H4B7 451 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 EFCAB1Q9HAE3 211 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 ZFP14Q9HCL3 533 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 TSR3Q9UJK0 312 aaKnown RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 PRPF19Q9UMS4 504 aaKnown RBP25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 L3MBTL1Q9Y468 752 aa25.92■■□□□ 1.74
CCDC88C-205ENST00000553403 TMEM265A0A087WTH1 108 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 PSMD11O00231 422 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 PSMD12O00232 456 aaPredicted RBP25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 AIM2O14862 343 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 CD1EP15812 388 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 VCLP18206 1134 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 AOAHP28039 575 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 NUDT2P50583 147 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 MESP2Q0VG99 397 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 CDKL4Q5MAI5 379 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 TANGO2Q6ICL3 276 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms