RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PDZK1P1A8MUH7 402 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 H3BRJ5 948 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 ZNF185O15231 689 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 RNF8O76064 485 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 EBLN1P0CF75 366 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 PRF1P14222 555 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 BRAFP15056 766 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 LPOP22079 712 aaPredicted RBP10.29□□□□□ -0.76
VPS29-208ENST00000550267 EEF1GP26641 437 aaKnown RBP10.29□□□□□ -0.76
VPS29-208ENST00000550267 SPINT3P49223 89 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 DSC2Q02487 901 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 MAMLD1Q13495 774 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 GPR18Q14330 331 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 INSCQ1MX18 579 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 TDRD12Q587J7 1177 aaKnown RBP10.29□□□□□ -0.76
VPS29-208ENST00000550267 CRTC3Q6UUV7 619 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 TMCO3Q6UWJ1 677 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 CERS6Q6ZMG9 384 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 RHOT1Q8IXI2 618 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 CISD2Q8N5K1 135 aaKnown RBP10.29□□□□□ -0.76
VPS29-208ENST00000550267 LPCAT1Q8NF37 534 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 ADAMTS17Q8TE56 1095 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 SLC41A2Q96JW4 573 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 RANBP9Q96S59 729 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 OR2AG1Q9H205 316 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 FAM83DQ9H4H8 585 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 ZWILCHQ9H900 591 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 POT1Q9NUX5 634 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 ASF1BQ9NVP2 202 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 TAS2R14Q9NYV8 317 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 DTLQ9NZJ0 730 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 DNAJC16Q9Y2G8 782 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 CACNA1DQ01668 2161 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 CELSR2Q9HCU4 2923 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 ANKRD17O75179 2603 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 C1orf232A0A0U1RR37 186 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 ARHGAP10A1A4S6 786 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 OR52A4PA6NMU1 304 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 TMCO5BA8MYB1 307 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 MTA2O94776 668 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 TMEM63AO94886 807 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 PRLP01236 227 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 IL4RP24394 825 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 RPL10P27635 214 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 SOX11P35716 441 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 ARL4AP40617 200 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 ZNF135P52742 658 aaPredicted RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 CDH6P55285 790 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 PDE1BQ01064 536 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 GPS2Q13227 327 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 RAPSNQ13702 412 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 ZRANB3Q5FWF4 1079 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 FAM69BQ5VUD6 431 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 PLEKHA7Q6IQ23 1121 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 ADGRG6Q86SQ4 1221 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 HPS6Q86YV9 775 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 PSTKQ8IV42 348 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 RAVER1Q8IY67 606 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 TEX26Q8N6G2 289 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 MR1Q95460 341 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 FCRL4Q96PJ5 515 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 MLPHQ9BV36 600 aaPredicted RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 TDRD1Q9BXT4 1180 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 POLR1EQ9GZS1 481 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 CHST8Q9H2A9 424 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 SLC40A1Q9NP59 571 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 FGF21Q9NSA1 209 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 PARVAQ9NVD7 372 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 PKD2L2Q9NZM6 624 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 TRIM10Q9UDY6 481 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 EPHA6Q9UF33 1036 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 DNPEPQ9ULA0 475 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 G3BP2Q9UN86 482 aaKnown RBP10.28□□□□□ -0.76
VPS29-208ENST00000550267 PCDHGA11Q9Y5H2 935 aa10.28□□□□□ -0.76
VPS29-208ENST00000550267 LRBAP50851 2863 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 SSU72P8A0A1W2PR75 194 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ANKUB1A6NFN9 424 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 TMEM191CA6NGB0 347 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 CPNE3O75131 537 aaKnown RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 SCRG1O75711 98 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 SLC25A14O95258 325 aaPredicted RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 ZNF7P17097 686 aaPredicted RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 IL1R2P27930 398 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 GRNP28799 593 aaKnown RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 DRG2P55039 364 aaKnown RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 ITGA1P56199 1179 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ACY1Q03154 408 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 KRT31Q15323 416 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 SMTNL2Q2TAL5 461 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 PLEKHN1Q494U1 663 aaPredicted RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 ZNF569Q5MCW4 686 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 FKBP15Q5T1M5 1219 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 IZUMO3Q5VZ72 239 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ALS2CLQ60I27 953 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 LCN10Q6JVE6 187 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ABRAXAS1Q6UWZ7 409 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 POLNQ7Z5Q5 900 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 IQCKQ8N0W5 287 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ENDOVQ8N8Q3 282 aaKnown RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 NEK11Q8NG66 645 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms