RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 INTS10Q9NVR2 710 aaKnown RBP14.82□□□□□ -0.04
CUX1-214ENST00000550008 GPSM3Q9Y4H4 160 aa14.82□□□□□ -0.04
CUX1-214ENST00000550008 A0A087WXM4 84 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 HPCAL1P37235 193 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 CCNFP41002 786 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 MFSD4BQ5TF39 518 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 SPNS2Q8IVW8 549 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 C2orf15Q8WU43 125 aaKnown RBP14.81□□□□□ -0.04
CUX1-214ENST00000550008 ATL1Q8WXF7 558 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 IL12RB2Q99665 862 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 COQ10BQ9H8M1 238 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 INSL5Q9Y5Q6 135 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 ADAMTSL1Q8N6G6 1762 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 GJB3O75712 270 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 CLDN9O95484 217 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 SERPINB10P48595 397 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 TNK2Q07912 1038 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 BLMHQ13867 455 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 MTSS1LQ765P7 747 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 ADHFE1Q8IWW8 467 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 COLGALT2Q8IYK4 626 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 OR10Q1Q8NGQ4 319 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 SUV39H2Q9H5I1 410 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 TFB2MQ9H5Q4 396 aaKnown RBP14.81□□□□□ -0.04
CUX1-214ENST00000550008 ZDHHC4Q9NPG8 344 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 ADPRHL2Q9NX46 363 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 FBXO10Q9UK96 956 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 MAGEA11P43364 429 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 ARL4DP49703 201 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 CCNHP51946 323 aaPredicted RBP14.81□□□□□ -0.04
CUX1-214ENST00000550008 CDKN2DP55273 166 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 PPP1R16AQ96I34 528 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 TMEM74Q96NL1 305 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 CORO1CQ9ULV4 474 aaPredicted RBP14.81□□□□□ -0.04
CUX1-214ENST00000550008 FADS3Q9Y5Q0 445 aa14.81□□□□□ -0.04
CUX1-214ENST00000550008 FYNP06241 537 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 KIR3DL1P43629 444 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 RPL5P46777 297 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 PSMD8P48556 350 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 ADRM1Q16186 407 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SLC5A9Q2M3M2 681 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 PAGE2BQ5JRK9 111 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 LYPLAL1Q5VWZ2 237 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 PM20D1Q6GTS8 502 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 TMEM220Q6QAJ8 160 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 METTL3Q86U44 580 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 NUDT4Q9NZJ9 180 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SAMHD1Q9Y3Z3 626 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 HAS3O00219 553 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 PABPC1P11940 636 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 RRM2P31350 389 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 NUP107P57740 925 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SIM2Q14190 667 aaPredicted RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 ARSIQ5FYB1 569 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 RABL3Q5HYI8 236 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 TPGS2Q68CL5 300 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 PPP4R4Q6NUP7 873 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SPATA19Q7Z5L4 167 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 OOSP2Q86WS3 158 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 BBS7Q8IWZ6 715 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 OR8D1Q8WZ84 308 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 HEPHQ9BQS7 1158 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 ETAA1Q9NY74 926 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 CNOT6Q9ULM6 557 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 ZNF840PA6NDX5 716 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 KPNA5O15131 536 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 GPR39O43194 453 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 HNRNPRO43390 633 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 SERPINI2O75830 405 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SORBS2O94875 1100 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 TRBC1P01850 177 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 T-ENOLP0DO92 83 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 MAT2AP31153 395 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 GSTA3Q16772 222 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 STEAP4Q687X5 459 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SMYD5Q6GMV2 418 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 TAS1R1Q7RTX1 841 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 C8orf59Q8N0T1 100 aaPredicted RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 ADCY4Q8NFM4 1077 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 OR2AP1Q8NGE2 309 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 ACDQ96AP0 544 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SAP18O00422 153 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 STC2O76061 302 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 PTPN2P17706 415 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 NSG1P42857 185 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 PSAPL1Q6NUJ1 521 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 FAM171BQ6P995 826 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 C7orf61Q8IZ16 206 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 FLCNQ8NFG4 579 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 ANKRD49Q8WVL7 239 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 SCAMP4Q969E2 229 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 ZFRQ96KR1 1074 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 ZNF599Q96NL3 588 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 NR1H4Q96RI1 486 aaPredicted RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 DUS2Q9NX74 493 aaKnown RBP14.8□□□□□ -0.04
CUX1-214ENST00000550008 ZNF510Q9Y2H8 683 aa14.8□□□□□ -0.04
CUX1-214ENST00000550008 C1QTNF3-AMACRE9PGA6 284 aa14.79□□□□□ -0.04
CUX1-214ENST00000550008 OAZ2O95190 189 aa14.79□□□□□ -0.04
CUX1-214ENST00000550008 ZNF37AP17032 561 aaPredicted RBP14.79□□□□□ -0.04
CUX1-214ENST00000550008 NR4A1P22736 598 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms