RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 VOPP1Q96AW1 172 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 RPL10LQ96L21 214 aaKnown RBP18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 LRRC3Q9BY71 257 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 COQ10BQ9H8M1 238 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 TMEM39AQ9NV64 488 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 EGFL7Q9UHF1 273 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 ATP11BQ9Y2G3 1177 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 SH3BP1Q9Y3L3 701 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 PCDHA9Q9Y5H5 950 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 SNX13Q9Y5W8 968 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 TRBV5-4A0A0C4DH59 114 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 FFAR2O15552 330 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 TGM5O43548 720 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 SLC22A3O75751 556 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 BAIAP3O94812 1187 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 SLC25A14O95258 325 aaPredicted RBP18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 CAPN1P07384 714 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 ACRV1P26436 265 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 IL12AP29459 219 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 CSNK1DP48730 415 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 HTR6P50406 440 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 KCNK10P57789 538 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 SEMG2Q02383 582 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 NRF1Q16656 503 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 MTX3Q5HYI7 312 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 ISLR2Q6UXK2 745 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 AMIGO2Q86SJ2 522 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 TSPAN33Q86UF1 283 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 CPXM2Q8N436 756 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 PIP4K2CQ8TBX8 421 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 ZUFSPQ96AP4 578 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 CNBD2Q96M20 576 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 ABCB8Q9NUT2 735 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 GNPTGQ9UJJ9 305 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 PTPRSQ13332 1948 aa18.27■□□□□ 0.52
PRPF40B-208ENST00000548436 ABHD14A-ACY1A0A1B0GW23 586 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 C7orf72A4D263 438 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 GOLGA8CPA6NN73 597 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 SOCS5O75159 536 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 TRIM16O95361 564 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 CNPP09543 421 aaKnown RBP18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 ITGALP20701 1170 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 CA8P35219 290 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 CTSOP43234 321 aaPredicted RBP18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 SLC7A9P82251 487 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 GTF2H2Q13888 395 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 CHRNA6Q15825 494 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 PLEKHG6Q3KR16 790 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 PDCD4Q53EL6 469 aaKnown RBP18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 MPPE1Q53F39 396 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 GTF2H2CQ6P1K8 395 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 SFRP1Q8N474 314 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 FNDC5Q8NAU1 212 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 OR4F6Q8NGB9 312 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 FIBINQ8TAL6 211 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 METTL6Q8TCB7 284 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 HBEGFQ99075 208 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 TSC22D3Q99576 134 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 NSUN3Q9H649 340 aaKnown RBP18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 ATP13A3Q9H7F0 1226 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 RIC8BQ9NVN3 520 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 ELOVL2Q9NXB9 296 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 KIAA1522Q9P206 1035 aaPredicted RBP18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 APPL1Q9UKG1 709 aa18.27■□□□□ 0.51
PRPF40B-208ENST00000548436 GLYATL1P3A0A0U1RQE8 302 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 TAPBPO15533 448 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 SYNCRIPO60506 623 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 EEDO75530 441 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 TIPRLO75663 272 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 STAMBPO95630 424 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 GUCA1CO95843 209 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 ARL1P40616 181 aaPredicted RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 STK19P49842 368 aaPredicted RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 FOXM1Q08050 763 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 NFYCQ13952 458 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 LIN52Q52LA3 116 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 SPPL2CQ8IUH8 684 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 CMTR2Q8IYT2 770 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 FIBCD1Q8N539 461 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 PDPRQ8NCN5 879 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 DNAJB14Q8TBM8 379 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 DIS3LQ8TF46 1054 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 TMEM125Q96AQ2 219 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 CCT7Q99832 543 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 SMG9Q9H0W8 520 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 PFDN4Q9NQP4 134 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 SLAMF8Q9P0V8 285 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 MAFFQ9ULX9 164 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 TNPO3Q9Y5L0 923 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 HELZP42694 1942 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 EME2A4GXA9 379 aaPredicted RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 RAD51BO15315 384 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 IGSF6O95976 241 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 SMIM18P0DKX4 95 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 MAPK8P45983 427 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 HSPA13P48723 471 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 POLR2JP52435 117 aaKnown RBP18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 ATP6AP1LQ52LC2 224 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 RABL3Q5HYI8 236 aa18.26■□□□□ 0.51
PRPF40B-208ENST00000548436 MPP7Q5T2T1 576 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms