RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 PBKQ96KB5 322 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 LINC00615Q96LM1 132 aaPredicted RBP11.61□□□□□ -0.55
HDAC4-216ENST00000544989 TTC1Q99614 292 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 COPS8Q99627 209 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 TLR10Q9BXR5 811 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 RDH14Q9HBH5 336 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 NLE1Q9NVX2 485 aaPredicted RBP11.61□□□□□ -0.55
HDAC4-216ENST00000544989 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.61□□□□□ -0.55
HDAC4-216ENST00000544989 PDP2Q9P2J9 529 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 SLC23A2Q9UGH3 650 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 DNAJC16Q9Y2G8 782 aa11.61□□□□□ -0.55
HDAC4-216ENST00000544989 COL27A1Q8IZC6 1860 aaPredicted RBP11.61□□□□□ -0.55
HDAC4-216ENST00000544989 TRBV23OR9-2A0A075B6M9 112 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 IGHV5-10-1A0A0J9YXX1 117 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 C17orf113A0A1B0GUU1 675 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 A0A1W2PNU3 283 aaPredicted RBP11.6□□□□□ -0.55
HDAC4-216ENST00000544989 MGAT4DA6NG13 374 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 TOX3O15405 576 aaPredicted RBP11.6□□□□□ -0.55
HDAC4-216ENST00000544989 CEP104O60308 925 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 AP2A2O94973 939 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 EML2O95834 649 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 ATP1B2P14415 290 aaPredicted RBP11.6□□□□□ -0.55
HDAC4-216ENST00000544989 PSMA3P25788 255 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 PPARGP37231 505 aaPredicted RBP11.6□□□□□ -0.55
HDAC4-216ENST00000544989 RAB15P59190 212 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 CACNG1Q06432 222 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 CCDC173Q0VFZ6 552 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 OLIG2Q13516 323 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 SNX1Q13596 522 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 SEPT6Q14141 434 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 LYPLAL1Q5VWZ2 237 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 ARMC3Q5W041 872 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 KLHL35Q6PF15 583 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 JAMLQ86YT9 394 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 SPACA3Q8IXA5 215 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 OR13C4Q8NGS5 318 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 OR2L2Q8NH16 312 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 CCDC74BQ96LY2 380 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 RANBP9Q96S59 729 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 NUDT22Q9BRQ3 303 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 CCM2Q9BSQ5 444 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 SEMA6CQ9H3T2 930 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 ETNK1Q9HBU6 452 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 EIF2B3Q9NR50 452 aaKnown RBP11.6□□□□□ -0.55
HDAC4-216ENST00000544989 RAB6BQ9NRW1 208 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 PISDQ9UG56 409 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 KCTD3Q9Y597 815 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 HEBP2Q9Y5Z4 205 aa11.6□□□□□ -0.55
HDAC4-216ENST00000544989 TRBV5-4A0A0C4DH59 114 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 MROH6A6NGR9 719 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 OR2AG2A6NM03 316 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 UBXN7O94888 489 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 AMD1P17707 334 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 TPH1P17752 444 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ADRA1DP25100 572 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ACRV1P26436 265 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 RPL10P27635 214 aaKnown RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 NDUFS1P28331 727 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 SLC5A2P31639 672 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 MC4RP32245 332 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 PRLHRP49683 370 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 CTSCP53634 463 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 TMPRSS3P57727 454 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 CDK16Q00536 496 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 TLE3Q04726 772 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 PTPRCAPQ14761 206 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 POU6F1Q14863 301 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 SIX1Q15475 284 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 SEPT7Q16181 437 aaKnown RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 COL28A1Q2UY09 1125 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ZRANB3Q5FWF4 1079 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 FNBP1LQ5T0N5 605 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 NKAIN2Q5VXU1 208 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 METRNLQ641Q3 311 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 CYB5D1Q6P9G0 228 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 C19orf48Q6RUI8 117 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ZNF574Q6ZN55 896 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 HM13Q8TCT9 377 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 NCSTNQ92542 709 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 CDKN2AIPNLQ96HQ2 116 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 DNAJC1Q96KC8 554 aaKnown RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 TEFMQ96QE5 360 aaKnown RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 TAAR9Q96RI9 348 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ZPBPQ9BS86 351 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ASPSCR1Q9BZE9 553 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 SLC40A1Q9NP59 571 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ZDHHC3Q9NYG2 299 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 TTC7AQ9ULT0 858 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ZNF106Q9H2Y7 1883 aaKnown RBP11.59□□□□□ -0.55
HDAC4-216ENST00000544989 KIF26BQ2KJY2 2108 aa11.59□□□□□ -0.55
HDAC4-216ENST00000544989 ATMQ13315 3056 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 IGLV3-16A0A075B6K0 115 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 B4E171 279 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 CASC3O15234 703 aaKnown RBP11.58□□□□□ -0.56
HDAC4-216ENST00000544989 KIF5CO60282 957 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 APRTP07741 180 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 ANKRD34CP0C6C1 535 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 SLC35G4P0C7Q5 338 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 CSF2RBP32927 897 aa11.58□□□□□ -0.56
HDAC4-216ENST00000544989 SLC19A1P41440 591 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms