RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZP3P21754 424 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 FSHRP23945 695 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 IRF3Q14653 427 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 BMT2Q1RMZ1 405 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 C6orf141Q5SZD1 244 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TIGD3Q6B0B8 471 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 MAMDC2Q7Z304 686 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 STX12Q86Y82 276 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TMC8Q8IU68 726 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 RHOT1Q8IXI2 618 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 CHDHQ8NE62 594 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 OR7G3Q8NG95 312 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 OR6M1Q8NGM8 313 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 LMO3Q8TAP4 145 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 BLOC1S5Q8TDH9 187 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 IPCEF1Q8WWN9 437 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 KAT5Q92993 513 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 LINC00052Q96N35 136 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 DCLRE1CQ96SD1 692 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 APOL4Q9BPW4 351 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 RAB34Q9BZG1 259 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TTYH1Q9H313 450 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ZDHHC4Q9NPG8 344 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 PRDM9Q9NQV7 894 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TBC1D13Q9NVG8 400 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 MALT1Q9UDY8 824 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 A0A0A6YYJ9 748 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 CHURC1-FNTBB4DL54 471 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 H0Y626 953 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 DPYSL4O14531 572 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 STX7O15400 261 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 PSIP1O75475 530 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 CYP11A1P05108 521 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 KRT18P05783 430 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 RRASP10301 218 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 DARSP14868 501 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ITGB6P18564 788 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 HK1P19367 917 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 RFX1P22670 979 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 OXTRP30559 389 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 HNF4AP41235 474 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 POU3F4P49335 361 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 KCNK10P57789 538 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 GCNT1Q02742 428 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 DGCR6Q14129 220 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 STXBP2Q15833 593 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TUSC1Q2TAM9 212 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ARMC4Q5T2S8 1044 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TBPL2Q6SJ96 375 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 PAMR1Q6UXH9 720 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 SNX20Q7Z614 316 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TRIM48Q8IWZ4 208 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 TIGD4Q8IY51 512 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ATG16L2Q8NAA4 619 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 UBASH3BQ8TF42 649 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 RORBQ92753 470 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 COPS5Q92905 334 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 GPRASP2Q96D09 838 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 SIGLEC10Q96LC7 697 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 SERPINB11Q96P15 392 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 CRISPLD2Q9H0B8 497 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ELOVL6Q9H5J4 265 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ZBTB20Q9HC78 741 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 SPAG4Q9NPE6 437 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF275Q9NSD4 429 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 PIH1D1Q9NWS0 290 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 KLHL21Q9UJP4 597 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 A0A1B0GWJ7 208 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PTGES3LE9PB15 166 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 WWP2O00308 870 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 HS6ST1O60243 411 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 CLN5O75503 358 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PRKCGP05129 697 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 AGXTP21549 392 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 EEF1A1P68104 462 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 EEF1A2Q05639 463 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 MEP1AQ16819 746 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 DUSP6Q16828 381 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 CTU2Q2VPK5 515 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 EEF1A1P5Q5VTE0 462 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PRAMEF18Q5VWM3 479 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 CES5AQ6NT32 575 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 SUSD1Q6UWL2 747 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 GK5Q6ZS86 529 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 NLRP8Q86W28 1048 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 KRT73Q86Y46 540 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ZDHHC13Q8IUH4 622 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 SULF1Q8IWU6 871 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF444Q8N0Y2 327 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 C9orf62Q8N4C0 152 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 CLRN3Q8NCR9 226 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 RNF34Q969K3 372 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 RAD51AP1Q96B01 352 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 UBXN10Q96LJ8 280 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PPP1R16BQ96T49 567 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 SLC9A7Q96T83 725 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 NMRK2Q9NPI5 230 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ANAPC2Q9UJX6 822 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 TRHDEQ9UKU6 1024 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 LIPT1Q9Y234 373 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms