RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 NOX1Q9Y5S8 564 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 A0A0J9YVX5 310 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 FAM237BA0A1B0GVD1 139 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 A8MUI8 341 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 PPEF2O14830 753 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 KERAO60938 352 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 NOL4O94818 638 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CD48P09326 243 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 FGFR3P22607 806 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF844Q08AG5 666 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 PDK4Q16654 411 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CMC1Q7Z7K0 106 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 Q96MT0 163 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 TSSK3Q96PN8 268 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 MRPL39Q9NYK5 338 aaKnown RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 WRAP73Q9P2S5 460 aaPredicted RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 FAM221BA6H8Z2 402 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 FKBP6O75344 327 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SAGP10523 405 aaPredicted RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CCNA2P20248 432 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 PTGER3P43115 390 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CDH13P55290 713 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF57Q68EA5 555 aaPredicted RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 TMEM156Q8N614 296 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SLC40A1Q9NP59 571 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SEC14L3Q9UDX4 400 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SUSD2Q9UGT4 822 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 C2CD4BA6NLJ0 364 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SOCS7O14512 581 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 HMGB3O15347 200 aaKnown RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 NDUFS4O43181 175 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ECDO95905 644 aaPredicted RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 NMBRP28336 390 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 IDH2P48735 452 aaKnown RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CLCNKAP51800 687 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 PRR5P85299 388 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 PIWIL4Q7Z3Z4 852 aaKnown RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 COX18Q8N8Q8 333 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 TMEM145Q8NBT3 493 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ZMIZ2Q8NF64 920 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF483Q8TF39 744 aaPredicted RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 FAR1Q8WVX9 515 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF599Q96NL3 588 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 IKZF3Q9UKT9 509 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 LRCH4O75427 683 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 WBP4O75554 376 aaKnown RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CLCN7P51798 805 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SMU1Q2TAY7 513 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 PRRT3Q5FWE3 981 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 SPDYCQ5MJ68 293 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 TRIQKQ629K1 86 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CAMK1DQ8IU85 385 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 OR4E2Q8NGC2 313 aa9.36□□□□□ -0.91
PTPRB-204ENST00000538708 MAGEE2Q8TD90 523 aaPredicted RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 ATXN2LQ8WWM7 1075 aaKnown RBP9.36□□□□□ -0.91
PTPRB-204ENST00000538708 CENPXA8MT69 81 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 RFTN2Q52LD8 501 aaPredicted RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 FBXL22Q6P050 247 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 C22orf39Q6P5X5 142 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 RINLQ6ZS11 566 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF280BQ86YH2 543 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 IL22RA1Q8N6P7 574 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 TTLQ8NG68 377 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 OR2AP1Q8NGE2 309 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 MYLK2Q9H1R3 596 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 ELAC1Q9H777 363 aaKnown RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 DKKL1Q9UK85 242 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 TCRBV9S1A1TA0A576 114 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SAP18O00422 153 aaKnown RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SNAP91O60641 907 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 TMCC2O75069 709 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 ABHD2P08910 425 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 KCNE1P15382 129 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SERPINB1P30740 379 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 JAG1P78504 1218 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 HNRNPDQ14103 355 aaKnown RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 NDUFAF6Q330K2 333 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 MFSD5Q6N075 450 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 PRDM8Q9NQV8 689 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 KMOO15229 486 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 PIAS1O75925 651 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 LAMP2P13473 410 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 RPL10P27635 214 aaKnown RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SLC7A2P52569 658 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 ARSJQ5FYB0 599 aaPredicted RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 PITRM1Q5JRX3 1037 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 DDI2Q5TDH0 399 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SYPL2Q5VXT5 272 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 NUP54Q7Z3B4 507 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 FAM81AQ8TBF8 368 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 FAM3CQ92520 227 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SMARCD2Q92925 531 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 FAXDC2Q96IV6 333 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 TEFMQ96QE5 360 aaKnown RBP9.35□□□□□ -0.91
PTPRB-204ENST00000538708 SGIP1Q9BQI5 828 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 ZDHHC3Q9NYG2 299 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 KLRF1Q9NZS2 232 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 OGDHLQ9ULD0 1010 aa9.35□□□□□ -0.91
PTPRB-204ENST00000538708 KCNK6Q9Y257 313 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms