RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MAPK9P45984 424 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 PPM1FP49593 454 aaPredicted RBP14.52□□□□□ -0.09
USP28-204ENST00000537642 CDKN1CP49918 316 aaPredicted RBP14.52□□□□□ -0.09
USP28-204ENST00000537642 MAPK10P53779 464 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 CLN3Q13286 438 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 SEPT6Q14141 434 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 NFE2L1Q14494 772 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 CCNG2Q16589 344 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 TMEM26Q6ZUK4 368 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 SNX20Q7Z614 316 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 LINC00523Q86TU6 105 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 TRIM48Q8IWZ4 208 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 NXPE1Q8N323 547 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 OR52K1Q8NGK4 314 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 NCSTNQ92542 709 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 USP7Q93009 1102 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 ULK4Q96C45 1275 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 ZNF514Q96K75 400 aaPredicted RBP14.52□□□□□ -0.09
USP28-204ENST00000537642 ZMYND15Q9H091 742 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 POT1Q9NUX5 634 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 OGFRQ9NZT2 677 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 FOXJ2Q9P0K8 574 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 AKAP7Q9P0M2 348 aaPredicted RBP14.52□□□□□ -0.09
USP28-204ENST00000537642 ACSL6Q9UKU0 697 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 SSUH2Q9Y2M2 353 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 SLC30A1Q9Y6M5 507 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 TRBV5-4A0A0C4DH59 114 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 MROH6A6NGR9 719 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 ERI2A8K979 691 aaKnown RBP14.51□□□□□ -0.09
USP28-204ENST00000537642 C9orf172C9J069 976 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 ZSCAN5DPP0CG00 497 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 PRSS56P0CW18 603 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 FGF3P11487 239 aaPredicted RBP14.51□□□□□ -0.09
USP28-204ENST00000537642 PSMA3P25788 255 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 CXCR5P32302 372 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 GRIA1P42261 906 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 SEMA5AQ13591 1074 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 BCL7AQ4VC05 210 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 SNAP47Q5SQN1 464 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 DRICH1Q6PGQ1 229 aaPredicted RBP14.51□□□□□ -0.09
USP28-204ENST00000537642 XKR5Q6UX68 686 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 CCDC89Q8N998 374 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 AGBL5Q8NDL9 886 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 STYXQ8WUJ0 223 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 CDKN2AIPNLQ96HQ2 116 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 EPB41L1Q9H4G0 881 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 SLC40A1Q9NP59 571 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 RAB6BQ9NRW1 208 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 PAK5Q9P286 719 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 PSMD13Q9UNM6 376 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 DRG1Q9Y295 367 aaKnown RBP14.51□□□□□ -0.09
USP28-204ENST00000537642 SDK2Q58EX2 2172 aa14.51□□□□□ -0.09
USP28-204ENST00000537642 IGLV3-16A0A075B6K0 115 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CCDC78A2IDD5 438 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 MGAT4DA6NG13 374 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 A8MU76 341 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CEP104O60308 925 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 UBXN7O94888 489 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 TYRP1P17643 537 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CSTF2P33240 577 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP28-204ENST00000537642 RPL22P35268 128 aaKnown RBP14.5□□□□□ -0.09
USP28-204ENST00000537642 HALP42357 657 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 LMAN1P49257 510 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 ARSDP51689 593 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CDH17Q12864 832 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 RPE65Q16518 533 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 GPR33Q49SQ1 333 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CCDC38Q502W7 563 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 ZRANB3Q5FWF4 1079 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 BROXQ5VW32 411 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 METRNLQ641Q3 311 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 ARHGAP22Q7Z5H3 698 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 DNAAF3Q8N9W5 541 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 GPR150Q8NGU9 434 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 OR2L2Q8NH16 312 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 MAIP1Q8WWC4 291 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 PMEPA1Q969W9 287 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CXorf40BQ96DE9 158 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 DCUN1D1Q96GG9 259 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 LINC00615Q96LM1 132 aaPredicted RBP14.5□□□□□ -0.09
USP28-204ENST00000537642 FCRL3Q96P31 734 aaPredicted RBP14.5□□□□□ -0.09
USP28-204ENST00000537642 COPS8Q99627 209 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 B3GNT4Q9C0J1 378 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 CPNE5Q9HCH3 593 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 OCIAD1Q9NX40 245 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 ZDHHC3Q9NYG2 299 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 ZKSCAN5Q9Y2L8 839 aa14.5□□□□□ -0.09
USP28-204ENST00000537642 MN1Q10571 1320 aaPredicted RBP14.49□□□□□ -0.09
USP28-204ENST00000537642 GOLGA6L3A6NEY3 463 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 E7EVH7 732 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 RALBP11234 206 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 ATP1B2P14415 290 aaPredicted RBP14.49□□□□□ -0.09
USP28-204ENST00000537642 ACRV1P26436 265 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 KCNJ1P48048 391 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 PRLHRP49683 370 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 GFERP55789 205 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 TMPRSS3P57727 454 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 CXADRP78310 365 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 CACNG1Q06432 222 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 GPR18Q14330 331 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms