RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	MFRP	Q9BY79	579 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	OR2AG1	Q9H205	316 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	RAD18	Q9NS91	495 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	LUZP4	Q9P127	313 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	B3GNT3	Q9Y2A9	372 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	SIK3	Q9Y2K2	1263 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	ESPL1	Q14674	2120 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TMEM191C	A6NGB0	347 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	EBLN1	P0CF75	366 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	BRAF	P15056	766 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZNF7	P17097	686 aa	Predicted RBP	12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	IDS	P22304	550 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	HAL	P42357	657 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	HSD11B2	P80365	405 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	ITK	Q08881	620 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	SEPT7	Q16181	437 aa	Known RBP	12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	POLN	Q7Z5Q5	900 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	D2HGDH	Q8N465	521 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	LPCAT1	Q8NF37	534 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	NEK11	Q8NG66	645 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	OR8K1	Q8NGG5	319 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	CPT1B	Q92523	772 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	TM9SF4	Q92544	642 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	MAML1	Q92585	1016 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	MR1	Q95460	341 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	SGSM3	Q96HU1	749 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	IP6K3	Q96PC2	410 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	DNAJC7	Q99615	494 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	BARD1	Q99728	777 aa	Known RBP	12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	NLN	Q9BYT8	704 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	RUBCNL	Q9H714	662 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	PCDH9	Q9HC56	1237 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	ETNK2	Q9NVF9	386 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	ASF1B	Q9NVP2	202 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	TCFL5	Q9UL49	500 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	CHKB	Q9Y259	395 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	LUC7L2	Q9Y383	392 aa	Known RBP	12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	SCIN	Q9Y6U3	715 aa		12.18	□□□□□ -0.46
CAPN1-223	ENST00000533079	HIVEP3	Q5T1R4	2406 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	OR52A4P	A6NMU1	304 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	KIF2A	O00139	706 aa	Predicted RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	KCNJ13	O60928	360 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	IPO13	O94829	963 aa	Known RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	FER	P16591	822 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	HNRNPH3	P31942	346 aa	Known RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZBED6	P86452	979 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	GPS2	Q13227	327 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	KCNAB1	Q14722	419 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	PLA2G4E	Q3MJ16	856 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	BOLA3	Q53S33	107 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	DNTTIP2	Q5QJE6	756 aa	Known RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	LYPLAL1	Q5VWZ2	237 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	E4F1	Q66K89	784 aa	Predicted RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	CRTC3	Q6UUV7	619 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	IGFL3	Q6UXB1	125 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	ADGRG6	Q86SQ4	1221 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	RAB43	Q86YS6	212 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	DSEL	Q8IZU8	1212 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	TRAM1L1	Q8N609	369 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	ENDOV	Q8N8Q3	282 aa	Known RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	GLYATL1	Q969I3	302 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZNF501	Q96CX3	271 aa	Predicted RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	C19orf60	Q96EN9	201 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	SMIM14	Q96QK8	99 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	NUP85	Q9BW27	656 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	SPATA16	Q9BXB7	569 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	ADGRE3	Q9BY15	652 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	ILKAP	Q9H0C8	392 aa	Predicted RBP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	FANCE	Q9HB96	536 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	SLC23A2	Q9UGH3	650 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	DNAJC16	Q9Y2G8	782 aa		12.17	□□□□□ -0.46
CAPN1-223	ENST00000533079	MED13	Q9UHV7	2174 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	UBA6	A0AVT1	1052 aa	Predicted RBP	12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	GOLGA6L9	A6NEM1	432 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ANKRD66	B4E2M5	251 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZNF185	O15231	689 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	MATN3	O15232	486 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZSCAN12	O43309	604 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	KRT86	O43790	486 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZBTB11	O95625	1053 aa	Predicted RBP	12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	PRL	P01236	227 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	IGHE	P01854	428 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	AMPD1	P23109	780 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	RPL10	P27635	214 aa	Known RBP	12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	DSC2	Q02487	901 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	TMTC4	Q5T4D3	741 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ST6GALNAC3	Q8NDV1	305 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	UBE2Q2	Q8WVN8	375 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	TEKT4	Q8WW24	435 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	SYN2	Q92777	582 aa	Predicted RBP	12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	DPH2	Q9BQC3	489 aa	Predicted RBP	12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	MLPH	Q9BV36	600 aa	Predicted RBP	12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	CHST8	Q9H2A9	424 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZFYVE1	Q9HBF4	777 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	SYTL2	Q9HCH5	934 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	AGPAT4	Q9NRZ5	378 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	ABHD10	Q9NUJ1	306 aa		12.16	□□□□□ -0.46
CAPN1-223	ENST00000533079	PADI2	Q9Y2J8	665 aa		12.16	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms