RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SPIDRQ14159 915 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 NFE2L1Q14494 772 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 CLCA4Q14CN2 919 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 ISXQ2M1V0 245 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 LYPLAL1Q5VWZ2 237 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 CES3Q6UWW8 571 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 CERS6Q6ZMG9 384 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 RBM44Q6ZP01 1051 aaKnown RBP19.5■□□□□ 0.71
CPSF1-209ENST00000532725 PCGF5Q86SE9 256 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 SLC9B2Q86UD5 537 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 JAMLQ86YT9 394 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 AGGF1Q8N302 714 aaeCLIP19.5■□□□□ 0.71
CPSF1-209ENST00000532725 CLDN19Q8N6F1 224 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 SPATA4Q8NEY3 305 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 DEPDC7Q96QD5 511 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 KRT12Q99456 494 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 CPNE7Q9UBL6 633 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 PRSS21Q9Y6M0 314 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 FRYQ5TBA9 3013 aa19.5■□□□□ 0.71
CPSF1-209ENST00000532725 C17orf113A0A1B0GUU1 675 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 PDZK1P1A8MUH7 402 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 TTI1O43156 1089 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 CSO75390 466 aaKnown RBP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 AP2A2O94973 939 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 CAPNS1P04632 268 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 ARNTP27540 789 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 CD1CP29017 333 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 NSG1P42857 185 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 HHEXQ03014 270 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 BIRC2Q13490 618 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 SQSTM1Q13501 440 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 SEMA3AQ14563 771 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 SEPT7Q16181 437 aaKnown RBP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 ZNF658BQ4V348 819 aaPredicted RBP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 FASTKD1Q53R41 847 aaKnown RBP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 PACS1Q6VY07 963 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 SIGLEC10Q96LC7 697 aa19.49■□□□□ 0.71
CPSF1-209ENST00000532725 C16orf45Q96MC5 204 aaPredicted RBP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 GFM1Q96RP9 751 aaKnown RBP19.49■□□□□ 0.71
CPSF1-209ENST00000532725 FAM237BA0A1B0GVD1 139 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 CD3EAPO15446 510 aaKnown RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 ZW10O43264 779 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 OR1I1O60431 355 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 PBLDP30039 288 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 ARCN1P48444 511 aaKnown RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 PDX1P52945 283 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 DHX34Q14147 1143 aaKnown RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 UNQ6494/PRO21346Q6UXR6 183 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 TMEM135Q86UB9 458 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 HOOK3Q86VS8 718 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 CFAP206Q8IYR0 622 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 SH3KBP1Q96B97 665 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 GRAMD1AQ96CP6 724 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 CNTNAP3BQ96NU0 1288 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 FCRL3Q96P31 734 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 TTC1Q99614 292 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 SLC38A3Q99624 504 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 CCM2Q9BSQ5 444 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 CNTNAP3Q9BZ76 1288 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 NRSN2Q9GZP1 204 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 MARCH4Q9P2E8 410 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 ACSL5Q9ULC5 683 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 ATXN7L1Q9ULK2 861 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 PCDHB1Q9Y5F3 818 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 ENTPD2Q9Y5L3 495 aa19.48■□□□□ 0.71
CPSF1-209ENST00000532725 COL27A1Q8IZC6 1860 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-209ENST00000532725 IGHV1OR21-1A0A087WYE8 117 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 OR52A4PA6NMU1 304 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 D6RAR5 112 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 VAPBO95292 243 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 AMZ1Q400G9 498 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 ANKRD20A4Q4UJ75 823 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 NKAIN2Q5VXU1 208 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 IZUMO3Q5VZ72 239 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 CASC4Q6P4E1 433 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 USP53Q70EK8 1073 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 TMPRSS9Q7Z410 1059 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 LDB1Q86U70 411 aaPredicted RBP19.47■□□□□ 0.71
CPSF1-209ENST00000532725 ZNF761Q86XN6 746 aaPredicted RBP19.47■□□□□ 0.71
CPSF1-209ENST00000532725 LILRA3Q8N6C8 439 aaPredicted RBP19.47■□□□□ 0.71
CPSF1-209ENST00000532725 AVL9Q8NBF6 648 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 TRIM56Q9BRZ2 755 aaKnown RBP19.47■□□□□ 0.71
CPSF1-209ENST00000532725 TRIM51Q9BSJ1 452 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 SYNDIG1Q9H7V2 258 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 UCK1Q9HA47 277 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 SLC40A1Q9NP59 571 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 CATSPERZQ9NTU4 200 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 KCNK4Q9NYG8 393 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 ANAPC5Q9UJX4 755 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 PSMD13Q9UNM6 376 aa19.47■□□□□ 0.71
CPSF1-209ENST00000532725 PRAMEF33A0A0G2JMD5 474 aa19.46■□□□□ 0.71
CPSF1-209ENST00000532725 TP73O15350 636 aa19.46■□□□□ 0.71
CPSF1-209ENST00000532725 VIPP01282 170 aa19.46■□□□□ 0.71
CPSF1-209ENST00000532725 PPARGP37231 505 aaPredicted RBP19.46■□□□□ 0.71
CPSF1-209ENST00000532725 CFHR1Q03591 330 aa19.46■□□□□ 0.71
CPSF1-209ENST00000532725 ZFP36L1Q07352 338 aaKnown RBP19.46■□□□□ 0.71
CPSF1-209ENST00000532725 RTP5Q14D33 572 aa19.46■□□□□ 0.71
CPSF1-209ENST00000532725 RPE65Q16518 533 aa19.46■□□□□ 0.71
CPSF1-209ENST00000532725 CLPPQ16740 277 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms