RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 MTRF1LQ9UGC7 380 aaKnown RBP9.65□□□□□ -0.86
TOPBP1-209ENST00000513818 TSR3Q9UJK0 312 aaKnown RBP9.65□□□□□ -0.86
TOPBP1-209ENST00000513818 CRYL1Q9Y2S2 319 aa9.65□□□□□ -0.86
TOPBP1-209ENST00000513818 FAM169AQ9Y6X4 670 aa9.65□□□□□ -0.86
TOPBP1-209ENST00000513818 CABIN1Q9Y6J0 2220 aa9.65□□□□□ -0.86
TOPBP1-209ENST00000513818 CEP250Q9BV73 2442 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 TRBV23OR9-2A0A075B6M9 112 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 CFAP99D6REC4 459 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 LMO7DNF2Z398 122 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GIPC1O14908 333 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 KMOO15229 486 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 CASC3O15234 703 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FLRT2O43155 660 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 DFNA5O60443 496 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FOXD2O60548 495 aaPredicted RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 NIPSNAP2O75323 286 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 NDUFS3O75489 264 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 POP7O75817 140 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 TTC4O95801 387 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FAM153BP0C7A2 387 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 RALBP11234 206 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 ATP1B2P14415 290 aaPredicted RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 ZNF7P17097 686 aaPredicted RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 OGNP20774 298 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FMO4P31512 558 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GRK6P43250 576 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PREPP48147 710 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 TTPAP49638 278 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PRLHRP49683 370 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 LIMK1P53667 647 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 MAZP56270 477 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 DNAJC3Q13217 504 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 ITIH4Q14624 930 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 NAA30Q147X3 362 aaPredicted RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 BRD3Q15059 726 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FAM153CQ494X1 144 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 BCL7AQ4VC05 210 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 CCDC157Q569K6 752 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 AARS2Q5JTZ9 985 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 MRNIPQ6NTE8 343 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 DUS1LQ6P1R4 473 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 CNSTQ6PJW8 725 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 XKR5Q6UX68 686 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GKN2Q86XP6 184 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 CILP2Q8IUL8 1156 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PALM2Q8IXS6 379 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 IFT20Q8IY31 132 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 SLC35F3Q8IY50 421 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FSTL5Q8N475 847 aaPredicted RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 FAM46DQ8NEK8 389 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 OR4C6Q8NH72 309 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 UHMK1Q8TAS1 419 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GSDMBQ8TAX9 411 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GPBAR1Q8TDU6 330 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 RHBDD1Q8TEB9 315 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 LPGAT1Q92604 370 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 ATXN7L3BQ96GX2 97 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 NDNQ99608 321 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 NAT9Q9BTE0 207 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GSDMCQ9BYG8 508 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 CDC42EP4Q9H3Q1 356 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 DPEP2Q9H4A9 486 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 RMI1Q9H9A7 625 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 VPS37BQ9H9H4 285 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PRDM8Q9NQV8 689 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 TRNAU1APQ9NX07 287 aaKnown RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GULP1Q9UBP9 304 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 TBC1D29Q9UFV1 150 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PCOLCE2Q9UKZ9 415 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PSMD13Q9UNM6 376 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 GPR34Q9UPC5 381 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PCDHGB2Q9Y5G2 931 aa9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PTPRZ1P23471 2315 aaPredicted RBP9.64□□□□□ -0.87
TOPBP1-209ENST00000513818 PIKFYVEQ9Y2I7 2098 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 LY6G6EA0A0G2JKS1 128 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 PRAMEF33A0A0G2JMD5 474 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 SPAARA0A1B0GVQ0 90 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 TCRBV9S1A1TA0A576 114 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 DCDC2BA2VCK2 349 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 PDZK1P1A8MUH7 402 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 CXorf49A8MYA2 514 aaPredicted RBP9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 SLC30A4O14863 429 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 EIF3HO15372 352 aaKnown RBP eCLIP9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 ACSL3O95573 720 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 RPL10P27635 214 aaKnown RBP9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 NSG1P42857 185 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 PGGT1BP53609 377 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 VSNL1P62760 191 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 CUL1Q13616 776 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 BOP1Q14137 746 aaKnown RBP9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 KYNUQ16719 465 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 ERCC6LQ2NKX8 1250 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 INAVAQ3KP66 663 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 C6orf132Q5T0Z8 1188 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 RBM20Q5T481 1227 aaKnown RBP9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 LYPLAL1Q5VWZ2 237 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 ARMC3Q5W041 872 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 PACS1Q6VY07 963 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 CERS6Q6ZMG9 384 aa9.63□□□□□ -0.87
TOPBP1-209ENST00000513818 SDCCAG8Q86SQ7 713 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms