RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF786Q8N393 782 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SIDT2Q8NBJ9 832 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RMDN1Q96DB5 314 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KCTD14Q9BQ13 255 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GPR62Q9BZJ7 368 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 A0A087WXM4 84 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RNF103-CHMP3A0A140T963 221 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PKMP14618 531 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 POLR2JP52435 117 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EEFSECP57772 596 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CBX3Q13185 183 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NANOGP8Q6NSW7 305 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TTC33Q6PID6 262 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TXNDC11Q6PKC3 985 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RNF19BQ6ZMZ0 732 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EEF1AKMT1Q8WVE0 214 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SPATA17Q96L03 361 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SEPT5Q99719 369 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C1orf50Q9BV19 199 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CINPQ9BW66 212 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TDRD1Q9BXT4 1180 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NANOGQ9H9S0 305 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 INTS7Q9NVH2 962 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 UBA2Q9UBT2 640 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LEF1Q9UJU2 399 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PTBP2Q9UKA9 531 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ZFP37Q9Y6Q3 630 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CCDC154A6NI56 674 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OR6C75A6NL08 312 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PITPNM1O00562 1244 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 E2F3O00716 465 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EI24O14681 340 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KDELR3O43731 214 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ACSL4O60488 711 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SNX2O60749 519 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MLYCDO95822 493 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CLIC3O95833 236 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 F11P03951 625 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C7P10643 843 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 HRH2P25021 359 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NAA20P61599 178 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ERVK-8P63133 956 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PTPRRQ15256 657 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RBBP7Q16576 425 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FXNQ16595 210 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C6orf136Q5SQH8 315 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TMTC4Q5T4D3 741 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C1orf53Q5VUE5 145 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 Q6ZSR9 355 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BBS5Q8N3I7 341 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CD200R1Q8TD46 325 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ISG20Q96AZ6 181 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FBXL20Q96IG2 436 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SPON2Q9BUD6 331 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RPF2Q9H7B2 306 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EIF2B4Q9UI10 523 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FKBPLQ9UIM3 349 aa15.9■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MICAL3Q7RTP6 2002 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OR4F21O95013 312 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 FCGR1AP12314 374 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CD9P21926 228 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SOX11P35716 441 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 EMX2Q04743 252 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 EFL1Q7Z2Z2 1120 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TNIP2Q8NFZ5 429 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OR56A4Q8NGH8 313 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PROKR1Q8TCW9 393 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GIPC2Q8TF65 315 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SEPT8Q92599 483 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PHF12Q96QT6 1004 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZIM2Q9NZV7 527 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ANAPC2Q9UJX6 822 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TMEM98Q9Y2Y6 226 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ST14Q9Y5Y6 855 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 MYO7AQ13402 2215 aa15.89■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 FAM234BA2RU67 622 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 C2orf81A6NN90 581 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 VPS26AO75436 327 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TIMP1P01033 207 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 UMPSP11172 480 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 VARSP26640 1264 aaKnown RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 MC4RP32245 332 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PSMD7P51665 324 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RPS24P62847 133 aaKnown RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZBED5Q49AG3 693 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TIGD2Q4W5G0 525 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GPRIN3Q6ZVF9 776 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 C16orf59Q7L2K0 433 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DCBLD1Q8N8Z6 715 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LPCAT1Q8NF37 534 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 BIRC7Q96CA5 298 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LINGO1Q96FE5 620 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 FAM193BQ96PV7 902 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 C8orf4Q9NR00 106 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZNF639Q9UID6 485 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ARIH1Q9Y4X5 557 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TYW5A2RUC4 315 aaKnown RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SEC24DO94855 1032 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CHEK2O96017 543 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LPOP22079 712 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms