RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CARD16Q5EG05 197 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TSTD2Q5T7W7 516 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 LPIN3Q9BQK8 851 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TMEM175Q9BSA9 504 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 ERVK-5Q9HDB9 667 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SEC14L3Q9UDX4 400 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 STOML2Q9UJZ1 356 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 OGDHLQ9ULD0 1010 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 MT-CYBP00156 380 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 GIMD1P0DJR0 217 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 ASPAP45381 313 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 MAPK12P53778 367 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SH3D19Q5HYK7 790 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 LDLRAP1Q5SW96 308 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 ALYREFQ86V81 257 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 UBR7Q8N806 425 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 ZNF540Q8NDQ6 660 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 KCNN2Q9H2S1 579 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TMEM27Q9HBJ8 222 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SLC17A7Q9P2U7 560 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 FBXW2Q9UKT8 454 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 BBIP1A8MTZ0 92 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 A8MUI8 341 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 ANXA4P09525 319 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 CRHR1P34998 444 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 LARS2Q15031 903 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 RTL4Q6ZR62 310 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TMC8Q8IU68 726 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 PDPRQ8NCN5 879 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 OR2T12Q8NG77 320 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SDCBP2Q9H190 292 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 PNPLA8Q9NP80 782 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 GRIN2DO15399 1336 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 PSMD4P55036 377 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SPIRE1Q08AE8 756 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 LRRC73Q5JTD7 316 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 KBTBD2Q8IY47 623 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 DHRS12A0PJE2 317 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SIN3BO75182 1162 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 VARSP26640 1264 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 DHPSP49366 369 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 STXBP1P61764 594 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TAF1AQ15573 450 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 HIPK1Q86Z02 1210 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 PNPT1Q8TCS8 783 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 IPCEF1Q8WWN9 437 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 RBM18Q96H35 190 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 GAL3ST4Q96RP7 486 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TRMT61BQ9BVS5 477 aaKnown RBP13.01□□□□□ -0.33
PTPRF-215ENST00000496447 CRISPLD1Q9H336 500 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 FAM53CQ9NYF3 392 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 TLR6Q9Y2C9 796 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 UNCXA6NJT0 531 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 FAM155BO75949 473 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 IL12AP29459 219 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 SLC7A2P52569 658 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 GTF2H2Q13888 395 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 GTF2H2CQ6P1K8 395 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 TUBA3EQ6PEY2 450 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 IKBIPQ70UQ0 350 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 ATP6V1C2Q8NEY4 427 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 CPT1BQ92523 772 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 C12orf66Q96MD2 445 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 RHOBTB2Q9BYZ6 727 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 PCBD2Q9H0N5 130 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 EGFL7Q9UHF1 273 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 KLF15Q9UIH9 416 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 MAGEL2Q9UJ55 1249 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 TIMM22Q9Y584 194 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 AVPR1BP47901 424 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 RASGEF1CQ8N431 466 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 BRSK1Q8TDC3 778 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 TWIST2Q8WVJ9 160 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 MFSD3Q96ES6 412 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 FAXDC2Q96IV6 333 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 JSRP1Q96MG2 331 aaPredicted RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 OR2AG1Q9H205 316 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 CMTM6Q9NX76 183 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 RAB26Q9ULW5 256 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 C9IYK1 514 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 H7C0S8 307 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 AQP1P29972 269 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 ADSSP30520 456 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 GJA9P57773 515 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 SOWAHAQ2M3V2 549 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 ISLR2Q6UXK2 745 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 JAZF1Q86VZ6 243 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 IRF2BP1Q8IU81 584 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 CADM2Q8N3J6 435 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 NEK7Q8TDX7 302 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 NKD2Q969F2 451 aaPredicted RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 NUS1Q96E22 293 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 PTPN18Q99952 460 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 SAMD4AQ9UPU9 718 aaKnown RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 ADH5P11766 374 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 LAMP2P13473 410 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 STAT5AP42229 794 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 JAM2P57087 298 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 ENPEPQ07075 957 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 CHIT1Q13231 466 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms