RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 ZDHHC20Q5W0Z9 365 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 SLC30A6Q6NXT4 461 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 FBXL22Q6P050 247 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 ARMC9Q7Z3E5 817 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 C1orf87Q8N0U7 546 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 ZNF441Q8N8Z8 693 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 CLEC18CQ8NCF0 446 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 CCDC191Q8NCU4 936 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 DNAAF4Q8WXU2 420 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 FIG4Q92562 907 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 LMLNQ96KR4 655 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 CCDC106Q9BWC9 280 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 TXLNGYQ9BZA5 131 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 GAREM1Q9H706 876 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 PCDH9Q9HC56 1237 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 LARSQ9P2J5 1176 aaKnown RBP4.31□□□□□ -1.72
SMC4-224ENST00000494612 RALYQ9UKM9 306 aaKnown RBP4.31□□□□□ -1.72
SMC4-224ENST00000494612 ZNF148Q9UQR1 794 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 VDAC3Q9Y277 283 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 TRPV2Q9Y5S1 764 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 EVPLQ92817 2033 aa4.31□□□□□ -1.72
SMC4-224ENST00000494612 LOC102723996A0A087X1L8 192 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 GPR75-ASB3A0A0A6YYF3 556 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 GLOD5A6NK44 160 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 TSPY2A6NKD2 308 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 CAMTA2O94983 1202 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 ABCB1P08183 1280 aaPredicted RBP4.3□□□□□ -1.72
SMC4-224ENST00000494612 TSPY3P0CV98 308 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 TSPY8P0CW00 308 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 GJA1P17302 382 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 IL11P20809 199 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 PPP5CP53041 499 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 CDH13P55290 713 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 TSPY1Q01534 308 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 AIMP1Q12904 312 aaKnown RBP4.3□□□□□ -1.72
SMC4-224ENST00000494612 SNTA1Q13424 505 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 IZUMO4Q1ZYL8 232 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 LETM2Q2VYF4 491 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 STXBP5Q5T5C0 1151 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 GFI1BQ5VTD9 330 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 ADALQ6DHV7 355 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 TMEM211Q6ICI0 200 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 OR7E24Q6IFN5 339 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 TEX38Q6PEX7 206 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 GFRALQ6UXV0 394 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 DENND5BQ6ZUT9 1274 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 INTS8Q75QN2 995 aaKnown RBP4.3□□□□□ -1.72
SMC4-224ENST00000494612 HAUS6Q7Z4H7 955 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 CUZD1Q86UP6 607 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 SFR1Q86XK3 245 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 TMEM219Q86XT9 240 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 EPHX4Q8IUS5 362 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 PM20D2Q8IYS1 436 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 GBGT1Q8N5D6 347 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 MINDY1Q8N5J2 469 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 OR52I2Q8NH67 350 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 LMO3Q8TAP4 145 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 SERINC2Q96SA4 455 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 SPATC1LQ9H0A9 340 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 KCNK15Q9H427 330 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 MBNL1Q9NR56 388 aaKnown RBP4.3□□□□□ -1.72
SMC4-224ENST00000494612 PSD3Q9NYI0 1048 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 NFKBIL1Q9UBC1 381 aaPredicted RBP4.3□□□□□ -1.72
SMC4-224ENST00000494612 RPS6KL1Q9Y6S9 549 aa4.3□□□□□ -1.72
SMC4-224ENST00000494612 PASKQ96RG2 1323 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 HLA-DOBP13765 273 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 POLR2CP19387 275 aaPredicted RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 KCNA5P22460 613 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 CAPZA2P47755 286 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 FASLGP48023 281 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 SEC61A1P61619 476 aaKnown RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 SNRPEP62304 92 aaKnown RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 CXCL9Q07325 125 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 KIF5AQ12840 1032 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 ZBTB17Q13105 803 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 GTF2H2Q13888 395 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 MVPQ14764 893 aaKnown RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 NADSYN1Q6IA69 706 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 GTF2H2CQ6P1K8 395 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 PRSS57Q6UWY2 283 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.29□□□□□ -1.72
SMC4-224ENST00000494612 TPRG1Q6ZUI0 275 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 ZNF534Q76KX8 674 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 PLPPR4Q7Z2D5 763 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 PRPF39Q86UA1 669 aaKnown RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 MCEMP1Q8IX19 187 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 POGLUT1Q8NBL1 392 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 SLC38A9Q8NBW4 561 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 RBM15BQ8NDT2 890 aaKnown RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 SPATA20Q8TB22 786 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 WDR20Q8TBZ3 569 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 MAGEC3Q8TD91 643 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 PTPMT1Q8WUK0 201 aaPredicted RBP4.29□□□□□ -1.72
SMC4-224ENST00000494612 TMEM255BQ8WV15 326 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 LPGAT1Q92604 370 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 SEMA4DQ92854 862 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 ZNF622Q969S3 477 aaKnown RBP eCLIP4.29□□□□□ -1.722e-7■■□□□ 13.9
SMC4-224ENST00000494612 CDCA5Q96FF9 252 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 CCDC34Q96HJ3 373 aa4.29□□□□□ -1.72
SMC4-224ENST00000494612 FAM81BQ96LP2 452 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms