RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 AFG1LQ8WV93 481 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 TRAPPC12Q8WVT3 735 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 OTULINQ96BN8 352 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 GCC1Q96CN9 775 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 KTI12Q96EK9 354 aaPredicted RBP3.18□□□□□ -1.9
PTCD3-218ENST00000493430 HERC2P3Q9BVR0 1158 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 NACAP1Q9BZK3 213 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 LSG1Q9H089 658 aaKnown RBP3.18□□□□□ -1.9
PTCD3-218ENST00000493430 UPF3AQ9H1J1 476 aaKnown RBP3.18□□□□□ -1.9
PTCD3-218ENST00000493430 SH2D4AQ9H788 454 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 MTMR10Q9NXD2 777 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 HOXC10Q9NYD6 342 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 DACT1Q9NYF0 836 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 MAD2L2Q9UI95 211 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 SLCO3A1Q9UIG8 710 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 FEM1BQ9UK73 627 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 TBX21Q9UL17 535 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 NAP1L2Q9ULW6 460 aaPredicted RBP3.18□□□□□ -1.9
PTCD3-218ENST00000493430 VDAC3Q9Y277 283 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 CHD9Q3L8U1 2897 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 PTPRDP23468 1912 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 ZNF318Q5VUA4 2279 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 ZMYM6O95789 1325 aa3.18□□□□□ -1.9
PTCD3-218ENST00000493430 LAMA2P24043 3122 aaKnown RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 FANCMQ8IYD8 2048 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ADAMTS9Q9P2N4 1935 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 CHD7Q9P2D1 2997 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 TMEM150BA6NC51 233 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ANTXRLA6NF34 631 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ACKR2O00590 384 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 IFIT3O14879 490 aaKnown RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 PRC1O43663 620 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 FGF17O60258 216 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 TIPRLO75663 272 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 KRT38O76015 456 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 SLC25A27O95847 323 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ATP1A1P05023 1023 aaKnown RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ICAM1P05362 532 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 CSF1P09603 554 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 TFPIP10646 304 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 MARK3P27448 753 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 NOVP48745 357 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ARSFP54793 590 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 GPNMBQ14956 572 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ALX1Q15699 326 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 PLEKHA7Q6IQ23 1121 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 SHFQ7M4L6 423 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ZC3HC1Q86WB0 502 aaKnown RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 SFTPA2Q8IWL1 248 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ARRDC2Q8TBH0 407 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 FIG4Q92562 907 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 GOLGA1Q92805 767 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 USP13Q92995 863 aaPredicted RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 C3orf30Q96M34 536 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 RMDN3Q96TC7 470 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 CDX2Q99626 313 aaPredicted RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 NPLQ9BXD5 320 aaPredicted RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 WDR12Q9GZL7 423 aaKnown RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 RWDD1Q9H446 243 aaPredicted RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 KAT14Q9H8E8 782 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 LY9Q9HBG7 655 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 G6PC2Q9NQR9 355 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ENTPD7Q9NQZ7 604 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 ZNF224Q9NZL3 707 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 IFT80Q9P2H3 777 aaPredicted RBP3.17□□□□□ -1.9
PTCD3-218ENST00000493430 SIX4Q9UIU6 781 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 TCF19Q9Y242 345 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 CNPY2Q9Y2B0 182 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 MMP24Q9Y5R2 645 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 NOTCH3Q9UM47 2321 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 TECTAO75443 2155 aa3.17□□□□□ -1.9
PTCD3-218ENST00000493430 PRUNE2Q8WUY3 3088 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 COL4A2P08572 1712 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 NUP210Q8TEM1 1887 aaPredicted RBP3.16□□□□□ -1.9
PTCD3-218ENST00000493430 C5orf42Q9H799 3197 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 TRANK1O15050 2925 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 KLRF2D3W0D1 207 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 FAM72CH0Y354 149 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 SH2B2O14492 632 aaPredicted RBP3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ATP2A1O14983 1001 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 HSPA12AO43301 675 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ZG16O60844 167 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ATP9AO75110 1047 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 DUSP11O75319 330 aaKnown RBP3.16□□□□□ -1.9
PTCD3-218ENST00000493430 GGPS1O95749 300 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ADAP00813 363 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 CD4P01730 458 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 LINC00271P0C7V0 271 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 UBA1P22314 1058 aaKnown RBP3.16□□□□□ -1.9
PTCD3-218ENST00000493430 MCM3P25205 808 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 TTKP33981 857 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 CDKN1AP38936 164 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 TAF6P49848 677 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 HDAC4P56524 1084 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ERVK11-1P61568 191 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ZNF155Q12901 538 aaPredicted RBP3.16□□□□□ -1.9
PTCD3-218ENST00000493430 ITGA7Q13683 1181 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 WTAPQ15007 396 aa3.16□□□□□ -1.9
PTCD3-218ENST00000493430 IMMTQ16891 758 aaKnown RBP3.16□□□□□ -1.9
PTCD3-218ENST00000493430 HSDL1Q3SXM5 330 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms