RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 AHSGP02765 367 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 HSPA7P48741 367 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 IDH3AP50213 366 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 LSM12Q3MHD2 195 aaKnown RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SIRPB2Q5JXA9 342 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 UBXN11Q5T124 520 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 BBS7Q8IWZ6 715 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 UBR7Q8N806 425 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 UBE2E3Q969T4 207 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SLC2A13Q96QE2 648 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 POLR3BQ9NW08 1133 aaPredicted RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 USE1Q9NZ43 259 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 MYH4Q9Y623 1939 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 OR2AG2A6NM03 316 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 PTGES3LE9PB15 166 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SLC28A1O00337 649 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 GABRDO14764 452 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SLC22A3O75751 556 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 HPCAL1P37235 193 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 ST13P50502 369 aaKnown RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 CLCQ05315 142 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 TNK2Q07912 1038 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 TAF1AQ15573 450 aaPredicted RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 ALFQ53S48 1182 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SFT2D3Q587I9 215 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 MTX3Q5HYI7 312 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 KLHL35Q6PF15 583 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 ZBTB2Q8N680 514 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SIDT2Q8NBJ9 832 aaKnown RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 HM13Q8TCT9 377 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 TWIST2Q8WVJ9 160 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SAMD11Q96NU1 681 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 NOL11Q9H8H0 719 aaKnown RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 PSAT1Q9Y617 370 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 SERPINI2O75830 405 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 TOP3BO95985 862 aaKnown RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 MAGEA11P43364 429 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 CAPZA2P47755 286 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 ARMCX4Q5H9R4 360 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 ZC3H12BQ5HYM0 836 aaKnown RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 ZBTB46Q86UZ6 589 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 C10orf53Q8N6V4 93 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 CLHC1Q8NHS4 586 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 AP2M1Q96CW1 435 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 CDKN2AIPNLQ96HQ2 116 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 KLHL32Q96NJ5 620 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 QRFPRQ96P65 431 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 POLR3HQ9Y535 204 aaPredicted RBP10.91□□□□□ -0.66
HDAC6-228ENST00000486227 FADS3Q9Y5Q0 445 aa10.91□□□□□ -0.66
HDAC6-228ENST00000486227 A0A1B0GUL6 1792 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 AGRPO00253 132 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 STK16O75716 305 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 OGNP20774 298 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 PRKCHP24723 683 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 IVDP26440 423 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 RRM2P31350 389 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TRIM25Q14258 630 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 RFTN1Q14699 578 aaPredicted RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ZDHHC20Q5W0Z9 365 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 COLGALT2Q8IYK4 626 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 EID3Q8N140 333 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ZNF599Q96NL3 588 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TSSK3Q96PN8 268 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 BBS4Q96RK4 519 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 MIPEPQ99797 713 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 GPATCH1Q9BRR8 931 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 WRAP53Q9BUR4 548 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ATG10Q9H0Y0 220 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 IPPKQ9H8X2 491 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 H2AFY2Q9P0M6 372 aaPredicted RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TRIM43BA6NCK2 446 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ZNF487B1APH4 448 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TAF4O00268 1085 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ESR1P03372 595 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 DLDP09622 509 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 PTGER3P43115 390 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 NRIP1P48552 1158 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ALDH6A1Q02252 535 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 LCP2Q13094 533 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 AP5B1Q2VPB7 878 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 KBTBD2Q8IY47 623 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 POF1BQ8WVV4 589 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 KCTD3Q9Y597 815 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 RGS5O15539 181 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ITM2AO43736 263 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 HS6ST1O60243 411 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 PPP2R1BP30154 601 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 GSSP48637 474 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 SLC18A2Q05940 514 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TRAF3Q13114 568 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TMEM26Q6ZUK4 368 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 GPR180Q86V85 440 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ZC3HC1Q86WB0 502 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 WDR48Q8TAF3 677 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 DENND1AQ8TEH3 1009 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ACDQ96AP0 544 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 TRMT61BQ9BVS5 477 aaKnown RBP10.9□□□□□ -0.66
HDAC6-228ENST00000486227 EPB41L4BQ9H329 900 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ZDHHC4Q9NPG8 344 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms