RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 AMZ2Q86W34 360 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 DDHD1Q8NEL9 900 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 BRSK1Q8TDC3 778 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 SLC45A3Q96JT2 553 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 OR6C1Q96RD1 312 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 ULBP3Q9BZM4 244 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 ZCCHC2Q9C0B9 1178 aaKnown RBP21.15■□□□□ 0.98
USP40-215ENST00000484528 GBA3Q9H227 469 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 WASH6PQ9NQA3 447 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 GEMIN8Q9NWZ8 242 aaKnown RBP21.15■□□□□ 0.98
USP40-215ENST00000484528 FAM8A1Q9UBU6 413 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 TRHDEQ9UKU6 1024 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 ARL5AQ9Y689 179 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 RCCD1A6NED2 376 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 SOWAHDA6NJG2 315 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 STX7O15400 261 aaKnown RBP21.14■□□□□ 0.97
USP40-215ENST00000484528 SFTPCP11686 197 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 AKT1P31749 480 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 CYLC1P35663 651 aaPredicted RBP21.14■□□□□ 0.97
USP40-215ENST00000484528 POLE2P56282 527 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 OTUD4Q01804 1114 aaKnown RBP21.14■□□□□ 0.97
USP40-215ENST00000484528 NFE2L1Q14494 772 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 LDLRAP1Q5SW96 308 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 CACHD1Q5VU97 1274 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 TMEM220Q6QAJ8 160 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 DET1Q7L5Y6 550 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 CCDC170Q8IYT3 715 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 BEND7Q8N7W2 519 aaPredicted RBP21.14■□□□□ 0.97
USP40-215ENST00000484528 ACTL9Q8TC94 416 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 MRPS18BQ9Y676 258 aaKnown RBP21.14■□□□□ 0.97
USP40-215ENST00000484528 NBASA2RRP1 2371 aa21.14■□□□□ 0.97
USP40-215ENST00000484528 PRAMEF1O95521 474 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 PSMB4P28070 264 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 OAS2P29728 719 aaKnown RBP21.13■□□□□ 0.97
USP40-215ENST00000484528 CTNNA1P35221 906 aaKnown RBP21.13■□□□□ 0.97
USP40-215ENST00000484528 GEMP55040 296 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 ABHD18Q0P651 414 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 CDC20Q12834 499 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 ITGA9Q13797 1035 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 FNBP1LQ5T0N5 605 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 ATP1A1-AS1Q5TC04 95 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 RBM12BQ8IXT5 1001 aaKnown RBP21.13■□□□□ 0.97
USP40-215ENST00000484528 STARD8Q92502 1023 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 SLC25A18Q9H1K4 315 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 ZNF768Q9H5H4 540 aaKnown RBP21.13■□□□□ 0.97
USP40-215ENST00000484528 LUC7LQ9NQ29 371 aaKnown RBP21.13■□□□□ 0.97
USP40-215ENST00000484528 KCTD3Q9Y597 815 aa21.13■□□□□ 0.97
USP40-215ENST00000484528 CFAP20Q9Y6A4 193 aaKnown RBP21.13■□□□□ 0.97
USP40-215ENST00000484528 HECTD1Q9ULT8 2610 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 STAT5AP42229 794 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 CCR10P46092 362 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 DMPKQ09013 629 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 KCNAB2Q13303 367 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 XRCC4Q13426 336 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 RPE65Q16518 533 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 ITPRIPL1Q6GPH6 555 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 AADACL2Q6P093 401 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 C16orf46Q6P387 395 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 PRSS42Q7Z5A4 293 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 PTRH1Q86Y79 214 aaKnown RBP21.12■□□□□ 0.97
USP40-215ENST00000484528 RASGRP3Q8IV61 690 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 ESX1Q8N693 406 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 GALNT6Q8NCL4 622 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 OR4K2Q8NGD2 314 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 ZNF398Q8TD17 642 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 DTX3LQ8TDB6 740 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 TRIT1Q9H3H1 467 aaKnown RBP21.12■□□□□ 0.97
USP40-215ENST00000484528 IMP3Q9NV31 184 aaKnown RBP21.12■□□□□ 0.97
USP40-215ENST00000484528 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.12■□□□□ 0.97
USP40-215ENST00000484528 FKBPLQ9UIM3 349 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 RPS6KL1Q9Y6S9 549 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 DUSP10Q9Y6W6 482 aa21.12■□□□□ 0.97
USP40-215ENST00000484528 TOX3O15405 576 aaPredicted RBP21.11■□□□□ 0.97
USP40-215ENST00000484528 PJA2O43164 708 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 ANXA9O76027 345 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 KIAA0754O94854 1291 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 WISP1O95388 367 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 MSH3P20585 1137 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 F8A1P23610 371 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 CTNNA2P26232 953 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 NAP1L1P55209 391 aaKnown RBP21.11■□□□□ 0.97
USP40-215ENST00000484528 EIF3EP60228 445 aaKnown RBP21.11■□□□□ 0.97
USP40-215ENST00000484528 PLCL1Q15111 1095 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 DUS1LQ6P1R4 473 aaKnown RBP21.11■□□□□ 0.97
USP40-215ENST00000484528 ATG14Q6ZNE5 492 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 CDKL3Q8IVW4 592 aaPredicted RBP21.11■□□□□ 0.97
USP40-215ENST00000484528 ZDHHC12Q96GR4 267 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 OSBPL8Q9BZF1 889 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 ADNPQ9H2P0 1102 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 CLMPQ9H6B4 373 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 SMOXQ9NWM0 555 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 LNPEPQ9UIQ6 1025 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 PCDHA3Q9Y5H8 950 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 EPN1Q9Y6I3 576 aaPredicted RBP21.11■□□□□ 0.97
USP40-215ENST00000484528 PIKFYVEQ9Y2I7 2098 aa21.11■□□□□ 0.97
USP40-215ENST00000484528 KCNN4O15554 427 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 SUV39H1O43463 412 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 KCNJ13O60928 360 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 NDUFA10O95299 355 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 RBP3P10745 1247 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms