RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CBARPQ8N350 705 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 PQLC3Q8N755 202 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 CCNYQ8ND76 341 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 FAM13CQ8NE31 585 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 OR6C4Q8NGE1 309 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 PIH1D2Q8WWB5 315 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 RAPGEF5Q92565 580 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 FGF11Q92914 225 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF578Q96N58 590 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 RNF157Q96PX1 679 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC3Q9BQI4 270 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 LGR4Q9BXB1 951 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 ASPNQ9BXN1 380 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TDRD1Q9BXT4 1180 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 MAK16Q9BXY0 300 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TEX101Q9BY14 249 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 SYNDIG1Q9H7V2 258 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 POLR1BQ9H9Y6 1135 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 FGF22Q9HCT0 170 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 MRPL40Q9NQ50 206 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 DDX56Q9NY93 547 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 GOLGA6AQ9NYA3 693 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 DTLQ9NZJ0 730 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 MOSPD1Q9UJG1 213 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 RPL26L1Q9UNX3 145 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 BPTFQ12830 3046 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 LAMA5O15230 3695 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 A0A0J9YYE9 177 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 CAPN8A6NHC0 703 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 C3orf70A6NLC5 250 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 B4DGG1 531 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 NTN3O00634 580 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 APOL1O14791 398 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PPP1R12AO14974 1030 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 SPOPO43791 374 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TRBC1P01850 177 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 HLA-DQB2P05538 268 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PYGLP06737 847 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 IVLP07476 585 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 RPL10P27635 214 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 GPR1P46091 355 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 LSSP48449 732 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ERVPABLB-1P60509 514 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 IFI35P80217 286 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 NIPAL4Q0D2K0 466 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 AP1B1Q10567 949 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ILF3Q12906 894 aaKnown RBP eCLIP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC10A2Q12908 348 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TBX2Q13207 712 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PEX6Q13608 980 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PDK1Q15118 436 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TCEAL1Q15170 157 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PTPRRQ15256 657 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 C3orf38Q5JPI3 329 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 LRRC66Q68CR7 880 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC9A4Q6AI14 798 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 CEP128Q6ZU80 1094 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TECPR1Q7Z6L1 1165 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TSPAN33Q86UF1 283 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 RFX6Q8HWS3 928 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 RHOT1Q8IXI2 618 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 RAVER1Q8IY67 606 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 NRSN1Q8IZ57 195 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PLD5Q8N7P1 536 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 FAM46DQ8NEK8 389 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 LPCAT1Q8NF37 534 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 GPR156Q8NFN8 814 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ARRDC2Q8TBH0 407 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 KIAA1524Q8TCG1 905 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 AP2M1Q96CW1 435 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ATXN7L3BQ96GX2 97 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PWWP2AQ96N64 755 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 GFM1Q96RP9 751 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 LGMNQ99538 433 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ADGRE3Q9BY15 652 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 GSDMCQ9BYG8 508 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 FRMD8Q9BZ67 464 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TRIM5Q9C035 493 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 TMEM168Q9H0V1 697 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 DPEP2Q9H4A9 486 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PCDH9Q9HC56 1237 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 THSD1Q9NS62 852 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 CD84Q9UIB8 345 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 SATB2Q9UPW6 733 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 CHKBQ9Y259 395 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC17A4Q9Y2C5 497 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 HEY1Q9Y5J3 304 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 ENTPD2Q9Y5L3 495 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 CACNA1GO43497 2377 aa6.76□□□□□ -1.33
CCDC88A-213ENST00000476903 PTPRQQ9UMZ3 2332 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 A0A0U1RQS6 177 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 C1orf232A0A0U1RR37 186 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 TMX2-CTNND1H3BSU7 103 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 KCNK1O00180 336 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 PSTPIP1O43586 416 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 NUDT21O43809 227 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 AKAP8O43823 692 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 NOBOXO60393 691 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms