RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 I6L893 689 aaPredicted RBP7.82□□□□□ -1.16
USP54-211ENST00000474929 SEC16AO15027 2179 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 GOSR1O95249 250 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 SOD1P00441 154 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 CPP00450 1065 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 MYL1P05976 194 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 ZNF30P17039 623 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 VCLP18206 1134 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 SLC19A1P41440 591 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 RENBPP51606 427 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 HCFC1P51610 2035 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 NKX6-1P78426 367 aaPredicted RBP7.82□□□□□ -1.16
USP54-211ENST00000474929 SLC6A3Q01959 620 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 TFF3Q07654 80 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 ABRQ12979 859 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 STK4Q13043 487 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 MANEALQ5VSG8 457 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 DENND2CQ68D51 928 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 DENND1BQ6P3S1 775 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 WASH2PQ6VEQ5 465 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 LINC00696Q6ZRV3 163 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 FAM183BPQ6ZVS7 135 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 NCCRP1Q6ZVX7 275 aaPredicted RBP7.82□□□□□ -1.16
USP54-211ENST00000474929 SRLQ86TD4 932 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 GHDCQ8N2G8 530 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 ARMC2Q8NEN0 867 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 LILRB4Q8NHJ6 448 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 FNIP1Q8TF40 1166 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 ZFPM2Q8WW38 1151 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 DOCK10Q96BY6 2186 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 THOC3Q96J01 351 aaKnown RBP7.82□□□□□ -1.16
USP54-211ENST00000474929 GPATCH1Q9BRR8 931 aaKnown RBP7.82□□□□□ -1.16
USP54-211ENST00000474929 CINPQ9BW66 212 aaPredicted RBP7.82□□□□□ -1.16
USP54-211ENST00000474929 AMBRA1Q9C0C7 1298 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.82□□□□□ -1.161e-6■■■■■ 33.1
USP54-211ENST00000474929 BLZF1Q9H2G9 400 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 NDFIP2Q9NV92 336 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 FANCLQ9NW38 375 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 LRFN1Q9P244 771 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 OR12D3Q9UGF7 316 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 TRPS1Q9UHF7 1281 aa7.82□□□□□ -1.16
USP54-211ENST00000474929 FAM90A27PA6NNH2 459 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 TMEM150CB9EJG8 249 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 TRAFD1O14545 582 aaPredicted RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 CETN3O15182 167 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 SLC16A3O15427 465 aaKnown RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 ATE1O95260 518 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 GNA15P30679 374 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 DCDP81605 110 aaKnown RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 NSUN2Q08J23 767 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP54-211ENST00000474929 LRMPQ12912 555 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 RFTN1Q14699 578 aaPredicted RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 PCBP2Q15366 365 aaKnown RBP eCLIP7.81□□□□□ -1.164e-9■■■■■ 37.7
USP54-211ENST00000474929 INSCQ1MX18 579 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CBWD6Q4V339 395 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CBWD3Q5JTY5 395 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CBWD5Q5RIA9 395 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CATSPEREQ5SY80 951 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 AGAP9Q5VTM2 703 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 ZNF385CQ66K41 422 aaPredicted RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 SMYD5Q6GMV2 418 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 ABRAXAS1Q6UWZ7 409 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CAPN12Q6ZSI9 719 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 Q6ZVL8 140 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 HSD11B1LQ7Z5J1 315 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 TRIM74Q86UV6 250 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CDC20BQ86Y33 519 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CEP57L1Q8IYX8 460 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 RTL3Q8N8U3 475 aaKnown RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 CATSPER1Q8NEC5 780 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CCDC110Q8TBZ0 833 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 FKBP10Q96AY3 582 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CPXM1Q96SM3 734 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 TIMM29Q9BSF4 260 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 SPRTNQ9H040 489 aaPredicted RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 C1GALT1Q9NS00 363 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 CDC23Q9UJX2 597 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 NXT1Q9UKK6 140 aaKnown RBP7.81□□□□□ -1.16
USP54-211ENST00000474929 GTF3C1Q12789 2109 aa7.81□□□□□ -1.16
USP54-211ENST00000474929 OR5K3A6NET4 321 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 WASH4PA8MWX3 477 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 A8MX80 341 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 H7C1Q1 480 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 RNF225M0QZC1 329 aaPredicted RBP7.8□□□□□ -1.16
USP54-211ENST00000474929 PMM2O15305 246 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 SPRY1O43609 319 aaPredicted RBP7.8□□□□□ -1.16
USP54-211ENST00000474929 KLK8O60259 260 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 NUAK1O60285 661 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 TOXO94900 526 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 LETM1O95202 739 aaPredicted RBP7.8□□□□□ -1.16
USP54-211ENST00000474929 PRAMEF1O95521 474 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 PREPP48147 710 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 DCAF7P61962 342 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 PRKAA1Q13131 559 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 SLC39A14Q15043 492 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 CYTH1Q15438 398 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 PLA2G4EQ3MJ16 856 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 RHBDD2Q6NTF9 364 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 P3H2Q8IVL5 708 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 LRRC75A-AS1Q8N1F1 130 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms