RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SGCGQ13326 291 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 RCN2Q14257 317 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 BCL7AQ4VC05 210 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 CFAP157Q5JU67 520 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ZNF771Q7L3S4 317 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-205ENST00000473099 SYT13Q7L8C5 426 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 CACUL1Q86Y37 369 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 UBALD2Q8IYN6 164 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 SPATA6LQ8N4H0 392 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 OR14C36Q8NHC7 312 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 EEF1AKMT1Q8WVE0 214 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ASZ1Q8WWH4 475 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 PTERQ96BW5 349 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 FAM136AQ96C01 138 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 HIC2Q96JB3 615 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 MRGPRX1Q96LB2 322 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ATOH8Q96SQ7 321 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 SLC30A3Q99726 388 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 TRMOQ9BU70 441 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 C1QTNF2Q9BXJ5 285 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 FAM126AQ9BYI3 521 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-205ENST00000473099 DRC3Q9H069 523 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 RABEP2Q9H5N1 569 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 TRIM39Q9HCM9 518 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ARL2BPQ9Y2Y0 163 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 TCRBV21S2A2A0A5A6 115 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 KLHL33A6NCF5 533 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 LRRC72A6NJI9 287 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 IQCF5A8MTL0 148 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 HSPA4LO95757 839 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 SOD1P00441 154 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 IMPDH1P20839 514 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 PLOD1Q02809 727 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 GALNT1Q10472 559 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 GBX1Q14549 363 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 TMEM259Q4ZIN3 620 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 CDKL4Q5MAI5 379 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 IER5LQ5T953 404 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 PNCKQ6P2M8 343 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 KIAA1324Q6UXG2 1013 aaKnown RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 TMEM92Q6UXU6 159 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 ZCCHC23Q6ZST2 131 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 FRA10AC1Q70Z53 315 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 HORMAD1Q86X24 394 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 GPSM1Q86YR5 675 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 WDR75Q8IWA0 830 aaKnown RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 DENND6BQ8NEG7 585 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 L3HYPDHQ96EM0 354 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 COX14Q96I36 57 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 CNDP1Q96KN2 507 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 GATA5Q9BWX5 397 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 SGK2Q9HBY8 427 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 EML4Q9HC35 981 aaKnown RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 NUDT4Q9NZJ9 180 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 GALPQ9UBC7 116 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 SERGEFQ9UGK8 458 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 FBXL21Q9UKT6 434 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 CNOT6Q9ULM6 557 aaKnown RBP12.63□□□□□ -0.39
VPS13D-205ENST00000473099 CA14Q9ULX7 337 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 GPR34Q9UPC5 381 aa12.63□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3DA0A087WVF3 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3IA0A087WXS9 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3EA0A087X179 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3KA0A087X1G2 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 KANSL1LA0AUZ9 987 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 NPEPPSL1A6NEC2 478 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3FA6NER0 549 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-205ENST00000473099 C19orf67A6NJJ6 358 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 SUPT3HB4E1H0 165 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3LB9A6J9 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 STX16-NPEPL1H3BU86 382 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 STX16O14662 325 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 RAD51BO15315 384 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 INPP4BO15327 924 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 NUAK1O60285 661 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 RNGTTO60942 597 aaKnown RBP12.62□□□□□ -0.39
VPS13D-205ENST00000473099 SUPT3HO75486 399 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 CDK14O94921 469 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 S100BP04271 92 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-205ENST00000473099 C8GP07360 202 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 ENO2P09104 434 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3HP0C7X1 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 GFAPP14136 432 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 ITGB6P18564 788 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 NDUFV2P19404 249 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 NAGLUP54802 743 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 HERVK_113P63132 956 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 PRKAA1Q13131 559 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 SP140Q13342 867 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 OR4D1Q15615 310 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TSNQ15631 228 aaKnown RBP12.62□□□□□ -0.39
VPS13D-205ENST00000473099 ZSCAN26Q16670 478 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3GQ6DHY5 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3CQ6IPX1 549 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TRIM69Q86WT6 500 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 HOMEZQ8IX15 550 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 TBC1D3Q8IZP1 549 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-205ENST00000473099 ZNF687Q8N1G0 1237 aa12.62□□□□□ -0.39
VPS13D-205ENST00000473099 FBXO39Q8N4B4 442 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms