RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZFAND4Q86XD8 727 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 RNF130Q86XS8 419 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HID1Q8IV36 788 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CEP97Q8IW35 865 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TOP6BLQ8N6T0 577 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NPWQ8N729 165 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HDAC10Q969S8 669 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF486Q96H40 463 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC32Q9BV29 185 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ALOXE3Q9BYJ1 711 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 IL1RAPQ9NPH3 570 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 C7orf66A4D0T2 115 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 MOCS2O96007 188 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CD1DP15813 335 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PTPRAP18433 802 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 WARSP23381 471 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HERVK_113P63132 956 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 MAP4K2Q12851 820 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NPTX1Q15818 432 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC92Q53HC0 331 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 GRAMD4Q6IC98 578 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TSPYL5Q86VY4 417 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 C7orf61Q8IZ16 206 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TCTE3Q8IZS6 198 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 DTWD1Q8N5C7 304 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 OR6J1Q8NGC5 347 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PGBD4Q96DM1 585 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 IMP4Q96G21 291 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 C7orf34Q96L11 122 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 WRNIP1Q96S55 665 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF382Q96SR6 550 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ERVK-6Q9BXR3 956 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 LHPPQ9H008 270 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HMX1Q9NP08 348 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CNGB3Q9NQW8 809 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ARHGAP33O14559 1287 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 RB1P06400 928 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 APRTP07741 180 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 H2AFB1P0C5Y9 115 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 H2AFB2P0C5Z0 115 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CKMT1AP12532 417 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 DDX5P17844 614 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 OXTRP30559 389 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PKLRP30613 574 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 RFX2P48378 723 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 DAB2P98082 770 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PROX2Q3B8N5 592 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 GNASQ5JWF2 1037 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TCHHL1Q5QJ38 904 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ATG9BQ674R7 924 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TBPL2Q6SJ96 375 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 GDPD3Q7L5L3 318 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF551Q7Z340 670 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 C14orf80Q86SX3 495 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 GLB1L3Q8NCI6 653 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 DUSP18Q8NEJ0 188 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 KIF12Q96FN5 646 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CNBD2Q96M20 576 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CLCA2Q9UQC9 943 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 FAM234BA2RU67 622 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ARIH2O95376 493 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF37AP17032 561 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 IRS1P35568 1242 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CDH15P55291 814 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ST8SIA6P61647 398 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 POU6F1Q14863 301 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 LRRC36Q1X8D7 754 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF691Q5VV52 312 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 UGT3A1Q6NUS8 523 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF549Q6P9A3 640 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CD300LGQ6UXG3 332 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 GIMAP1Q8WWP7 306 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 LCORQ96JN0 433 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 DHRS9Q9BPW9 319 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SERHLQ9NQF3 203 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TEKT2Q9UIF3 430 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SLC13A4Q9UKG4 626 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 WDR27A2RRH5 827 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 C16orf96A6NNT2 1141 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SLC1A7O00341 560 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 RFPL2O75678 378 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SERPIND1P05546 499 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ATP6V1E1P36543 226 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ACOT2P49753 483 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 MVDP53602 400 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 VEZF1Q14119 521 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HEATR6Q6AI08 1181 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SPATA19Q7Z5L4 167 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ZCCHC7Q8N3Z6 543 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 IPCEF1Q8WWN9 437 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 BIRC7Q96CA5 298 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 UBL7Q96S82 380 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NT5C1AQ9BXI3 368 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PCDHAC1Q9H158 963 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NOL6Q9H6R4 1146 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ELP3Q9H9T3 547 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 C3orf14Q9HBI5 128 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ISYNA1Q9NPH2 558 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 RNF146Q9NTX7 359 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms